BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0057.p         (238 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0459 [S] COG4395 Uncharacterized protein conserved in bacteri...   188   1e-47
VC1964 [S] COG4395 Uncharacterized protein conserved in bacteria...    82   7e-16
PA5528 [S] COG4395 Uncharacterized protein conserved in bacteria...    76   7e-14

>RSc0459 [S] COG4395 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 356

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 104/126 (82%)

Query: 113 PWGIPADFDVAGFVRSGKTYFIRLQAAWDRGDINDIREFTTPEMFGELRLQLQERGSVAN 172
           PWG+PADFD   F+R+ K YF+RLQAAWD G++NDIREFTTPEMF E+++ L +RG+V N
Sbjct: 230 PWGVPADFDTQAFLRNAKVYFVRLQAAWDAGNLNDIREFTTPEMFAEIKMDLTDRGTVPN 289

Query: 173 NTDVVQIDGELLGIETLEHDYLATIKFTGLIKEAPDASAEPFAEIWNLSKPVNGAGGWVL 232
            TDVV ++ ELLGIET   +YLA+++F+G+I+E   A A+PFAE+WNL+KP  G+GGWVL
Sbjct: 290 KTDVVSVEAELLGIETHPTEYLASVRFSGMIREETSAPAQPFAEVWNLTKPTQGSGGWVL 349

Query: 233 AGIQQV 238
           AGIQQ+
Sbjct: 350 AGIQQL 355


>VC1964 [S] COG4395 Uncharacterized protein conserved in bacteria Vch
           Vibrio cholerae
          Length = 291

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 24/214 (11%)

Query: 26  ILMVALLAFVAMFLFRMFTRKSGGNTGSAGNNGFTPQPAYASAPEPAVYTPEIGSRIEPV 85
           IL++ L+AFV   L R F     G+      N    QPAY+         P + +     
Sbjct: 98  ILIMGLIAFVIFKLMRAFLASKQGSI-----NQSQQQPAYSGMNRTPFEQPNVHN----- 147

Query: 86  GVQAPASLQGNNEFGSSAAAAANAPIIPWGIPADFDVAGFVRSGKTYFIRLQAAWDRGDI 145
             + P S+ G   FGS+A +      +P   PA FD   FV   + ++  LQ AW+   +
Sbjct: 148 -FEQPQSMGGG--FGSAAQSD-----VPHNYPAGFDRVAFVNGAREHYRILQGAWNHNQL 199

Query: 146 NDIREFTTPEMFGELRLQLQERGSVA--NNTDVVQIDGELLGIETLEHDYLATIKFTGLI 203
             IRE+ +P +F +L+    ER +     +TDV+ +D E++  +   +    +++F+G  
Sbjct: 200 ETIREYVSPSLFEDLKA---ERANYEGDQHTDVMYVDAEIVRADYDANRAQLSLQFSGRY 256

Query: 204 KEAPDASAEPFAEIWNLSKPVNGAGG-WVLAGIQ 236
           ++A +   E   ++W+L + +      W++ GIQ
Sbjct: 257 RDAVEGIEENIEDVWHLERDLTVPNAPWLIVGIQ 290


>PA5528 [S] COG4395 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 284

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 32/239 (13%)

Query: 1   LLGLGLGALLSHFGMGGAMASM-LSTILMVALLAFVAMFLFRMFT-RKSGGNTGSAGNNG 58
           L G+  G LL+   MG     + +  IL++AL+AF+A   FR    R+   N G     G
Sbjct: 75  LAGIAAGGLLASMFMGDGFEGIQMLDILLIALVAFIA---FRFIAARRRQQNQGQPAMAG 131

Query: 59  FTPQPAYASAPEPAVYTPEIGSRIEPVGVQAPASLQGNNEFGSSAAAAANAPIIPWGIPA 118
             P      A  P                            G++AAAAA +P+I    P+
Sbjct: 132 HAPMQREMPAQAPIFG-------------------------GAAAAAAAPSPVI--NAPS 164

Query: 119 DFDVAGFVRSGKTYFIRLQAAWDRGDINDIREFTTPEMFGELRLQLQERGSVANNTDVVQ 178
            F+   FV + + +F+ LQ  WD  +++ I EF TP+M   L+ +  E G    +T +  
Sbjct: 165 WFNEERFVGAAREHFMSLQQHWDANEMDKIAEFVTPQMLQWLKQERAEIGDAYQSTYIDN 224

Query: 179 IDGELLGIETLEHDYLATIKFTGLIKEAPDASAEPFAEIWNLSKPVNGAGGWVLAGIQQ 237
           +  +L G++      +AT+ F+G+ K +     E F+E W + +       W++AGI+Q
Sbjct: 225 LVVQLDGVDDQADKTIATLTFSGVSKTSRFDQGEAFSESWRMERAQGENQPWLVAGIRQ 283