BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0039.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0399 [L] COG0266 Formamidopyrimidine-DNA glycosylase Rso Rals...   214   9e-56
PA0357 [L] COG0266 Formamidopyrimidine-DNA glycosylase Pae Pseud...   166   3e-41
mutM [L] COG0266 Formamidopyrimidine-DNA glycosylase Eco Escheri...   150   1e-36
ZmutM [L] COG0266 Formamidopyrimidine-DNA glycosylase EcZ Escher...   150   2e-36
ECs4510 [L] COG0266 Formamidopyrimidine-DNA glycosylase Ecs Esch...   150   2e-36

>RSc0399 [L] COG0266 Formamidopyrimidine-DNA glycosylase Rso Ralstonia
           solanacearum
          Length = 288

 Score =  214 bits (544), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 117/160 (73%)

Query: 1   VLWHDNADGDIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGN 60
           VLWHD  +  +  H LLR LG+EP + +F    ++ +TR RSA IK VLLAGDIVVGVGN
Sbjct: 129 VLWHDGDEAALSAHPLLRNLGIEPFDTRFDGDWMYARTRGRSAAIKTVLLAGDIVVGVGN 188

Query: 61  IYASESLFKAGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGY 120
           IY SESLF+AGI P TAAG+IS PRY  L  AIR TLA AI +GGS+LRDF+  +GQSGY
Sbjct: 189 IYCSESLFRAGIRPTTAAGRISRPRYAALAEAIRATLADAIARGGSTLRDFVGSDGQSGY 248

Query: 121 FQQSYFVYSRTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           FQ    VY R G  CR+C TPIRQI QGQRSTFYC  CQR
Sbjct: 249 FQLDALVYDRAGLPCRVCGTPIRQIVQGQRSTFYCPACQR 288


>PA0357 [L] COG0266 Formamidopyrimidine-DNA glycosylase Pae Pseudomonas
           aeruginosa
          Length = 270

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 77/148 (52%), Positives = 103/148 (69%)

Query: 13  EHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGNIYASESLFKAGI 72
           EH LLR LG EPL D F+ + L   +R RS  +K  ++   +VVGVGNIYASE+LF AGI
Sbjct: 123 EHELLRNLGPEPLTDAFAGQRLFELSRGRSMAVKPFIMDNAVVVGVGNIYASEALFAAGI 182

Query: 73  NPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGYFQQSYFVYSRTG 132
           +P+  AG IS  RY +L   I+  LA AIE+GG++LRDF+  +GQ GYFQQ  FVY R G
Sbjct: 183 DPRKPAGSISKARYLRLAEEIKRILAIAIERGGTTLRDFVGGDGQPGYFQQELFVYGRGG 242

Query: 133 QACRICTTPIRQIKQGQRSTFYCVVCQR 160
           + C++C + +R+I+ GQR++ YC  CQR
Sbjct: 243 EFCKVCGSTLREIRLGQRASVYCPRCQR 270


>mutM [L] COG0266 Formamidopyrimidine-DNA glycosylase Eco Escherichia
           coli K12
          Length = 269

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 95/151 (62%)

Query: 10  DIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGNIYASESLFK 69
           ++E H +L  LG EPL D F+   LH++   +   IK  L+   +VVGVGNIYASESLF 
Sbjct: 119 ELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFA 178

Query: 70  AGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGYFQQSYFVYS 129
           AGI+P   A  +SL   E L   I+  L  +IEQGG++L+DF+  +G+ GYF Q   VY 
Sbjct: 179 AGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYG 238

Query: 130 RTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           R G+ CR+C TPI   K  QR+TFYC  CQ+
Sbjct: 239 RKGEPCRVCGTPIVATKHAQRATFYCRQCQK 269


>ZmutM [L] COG0266 Formamidopyrimidine-DNA glycosylase EcZ Escherichia
           coli O157:H7 EDL933
          Length = 269

 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 95/151 (62%)

Query: 10  DIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGNIYASESLFK 69
           ++E H +L  LG EPL D F+   LH++   +   IK  L+   +VVGVGNIYASESLF 
Sbjct: 119 ELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFA 178

Query: 70  AGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGYFQQSYFVYS 129
           AGI+P   A  +SL   E L   I+  L  +IEQGG++L+DF+  +G+ GYF Q   VY 
Sbjct: 179 AGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYG 238

Query: 130 RTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           R G+ CR+C TPI   K  QR+TFYC  CQ+
Sbjct: 239 RKGEPCRVCGTPIVATKHAQRATFYCRQCQK 269


>ECs4510 [L] COG0266 Formamidopyrimidine-DNA glycosylase Ecs Escherichia
           coli O157:H7
          Length = 269

 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 95/151 (62%)

Query: 10  DIEEHTLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGNIYASESLFK 69
           ++E H +L  LG EPL D F+   LH++   +   IK  L+   +VVGVGNIYASESLF 
Sbjct: 119 ELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFA 178

Query: 70  AGINPKTAAGKISLPRYEKLVTAIRETLAAAIEQGGSSLRDFIAVNGQSGYFQQSYFVYS 129
           AGI+P   A  +SL   E L   I+  L  +IEQGG++L+DF+  +G+ GYF Q   VY 
Sbjct: 179 AGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYG 238

Query: 130 RTGQACRICTTPIRQIKQGQRSTFYCVVCQR 160
           R G+ CR+C TPI   K  QR+TFYC  CQ+
Sbjct: 239 RKGEPCRVCGTPIVATKHAQRATFYCRQCQK 269