BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0017.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2100 [S] COG2119 Predicted membrane protein Rso Ralstonia sol...   249   2e-66
CC2370 Non COG                                                        201   5e-52
PA4629 [S] COG2119 Predicted membrane protein Pae Pseudomonas ae...   174   1e-43
VC0022 [S] COG2119 Predicted membrane protein Vch Vibrio cholerae     171   1e-42
Rv3848 [S] COG2119 Predicted membrane protein Mtu Mycobacterium ...    79   5e-15

>RSc2100 [S] COG2119 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 204

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/190 (63%), Positives = 154/190 (81%), Gaps = 3/190 (1%)

Query: 1   LDAFLISTGVVALAEIGDKTQLLAFILAAKFRKPIPIILGVLVSTIANHAFAGALGAWIT 60
           ++AFL+STG+VALAEIGDKTQLL+ +LAA+FRKP+PIILG+ +ST+ NHA AG +G WIT
Sbjct: 15  MEAFLVSTGIVALAEIGDKTQLLSILLAARFRKPVPIILGIFISTLVNHACAGVVGGWIT 74

Query: 61  SLVSPETMRWILGVSFIGMAIWTLIPDKFDESEARFAR---FGVFGTTVIAFFLAEMGDK 117
            ++  + +RWILG  FI MA+W LIPDK D+ EA        G+ GTT++AFF AEMGDK
Sbjct: 75  QVLGEDILRWILGAGFIAMAVWMLIPDKLDDEEAPSGTQRGLGILGTTLVAFFFAEMGDK 134

Query: 118 TQVATVALAAQYHAFVPVVAGTTLGMMIANVPAVLLGDRIAGKIPVRVVHAIAALIFAII 177
           TQ+ATVALAA++H  V VVAGTT+GM++ANVPAVLLGD+ A ++P+++VH IAALIF  +
Sbjct: 135 TQIATVALAARFHDVVAVVAGTTIGMLLANVPAVLLGDKFASRMPIKLVHRIAALIFLAL 194

Query: 178 GVMTLLGAGK 187
           GVM LLG GK
Sbjct: 195 GVMALLGVGK 204


>CC2370 Non COG
          Length = 207

 Score =  201 bits (512), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/180 (58%), Positives = 132/180 (73%), Gaps = 1/180 (0%)

Query: 1   LDAFLISTGVVALAEIGDKTQLLAFILAAKFRKPIPIILGVLVSTIANHAFAGALGAWIT 60
           +++ L+ST VVA+AEIGDKTQLLA ILA +F+KPIPII+G+LV+T+ANHA A   G W+ 
Sbjct: 17  MESLLVSTLVVAIAEIGDKTQLLAIILATRFKKPIPIIMGILVATLANHALAATAGYWVA 76

Query: 61  SLVSPETMRWILGVSFIGMAIWTLIPDKFDESEARFA-RFGVFGTTVIAFFLAEMGDKTQ 119
             +S    RW + VSFI MA W LIPDK D+ E   A R+GVF TT IAFFL EMGDKTQ
Sbjct: 77  DFLSGAWFRWAIAVSFIAMAAWALIPDKADDEEGDAAGRYGVFLTTTIAFFLVEMGDKTQ 136

Query: 120 VATVALAAQYHAFVPVVAGTTLGMMIANVPAVLLGDRIAGKIPVRVVHAIAALIFAIIGV 179
           +ATVAL A++ +   V AGTTLGMM+ANVPAV LG+     +P++ V   AA+IF  +GV
Sbjct: 137 IATVALGAKFQSIALVAAGTTLGMMLANVPAVYLGEAATKVVPLKYVRIGAAVIFLALGV 196


>PA4629 [S] COG2119 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 192

 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 129/167 (77%)

Query: 1   LDAFLISTGVVALAEIGDKTQLLAFILAAKFRKPIPIILGVLVSTIANHAFAGALGAWIT 60
           +++  + T +VALAEIGDKTQLLA +LAA+FRKP PII G++ +T+ANH  AGA+GAW+ 
Sbjct: 1   MESLFVPTLIVALAEIGDKTQLLALLLAARFRKPWPIIAGIVAATLANHFAAGAVGAWVA 60

Query: 61  SLVSPETMRWILGVSFIGMAIWTLIPDKFDESEARFARFGVFGTTVIAFFLAEMGDKTQV 120
           S  S  T+ WIL  SFI +A+WTL+PDK D+ E+   ++G F TT+IAFFLAEMGDKTQV
Sbjct: 61  SFFSEATLSWILAASFIAVALWTLVPDKLDDEESGLKKYGPFLTTLIAFFLAEMGDKTQV 120

Query: 121 ATVALAAQYHAFVPVVAGTTLGMMIANVPAVLLGDRIAGKIPVRVVH 167
           ATV LAAQY  F  VV GTTLGM+IANVP VL+G+  A K+P+ ++ 
Sbjct: 121 ATVMLAAQYPHFWLVVIGTTLGMLIANVPVVLIGNLAADKLPLTLIR 167


>VC0022 [S] COG2119 Predicted membrane protein Vch Vibrio cholerae
          Length = 200

 Score =  171 bits (432), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 124/177 (70%), Gaps = 2/177 (1%)

Query: 6   ISTGVVALAEIGDKTQLLAFILAAKFRKPIPIILGVLVSTIANHAFAGALGAWITSLVSP 65
           IS   VALAEIGDKTQLL+ +LA+++RKPIPII  + ++T+ANHA A  LG  +   +SP
Sbjct: 22  ISITTVALAEIGDKTQLLSLLLASRYRKPIPIIAAIFLATLANHALAAWLGVVVADYLSP 81

Query: 66  ETMRWILGVSFIGMAIWTLIPDKFDESEARFARFGVFGTTVIAFFLAEMGDKTQVATVAL 125
           + ++W+L VSF+ MA W LIPDK D  E+   R G F  + IAFF+AE+GDKTQ+AT  L
Sbjct: 82  DILKWVLVVSFLAMAGWILIPDKLDGEESISTR-GPFVASFIAFFMAEIGDKTQIATSIL 140

Query: 126 AAQY-HAFVPVVAGTTLGMMIANVPAVLLGDRIAGKIPVRVVHAIAALIFAIIGVMT 181
            AQY  A   V+ GTTLGM++ANVP VL+G   A K+P+ ++  + A +F ++ + T
Sbjct: 141 GAQYADALSWVIVGTTLGMLLANVPVVLIGKLSADKMPLGLIRKVTAGLFLLMALAT 197


>Rv3848 [S] COG2119 Predicted membrane protein Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 302

 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 7/171 (4%)

Query: 1   LDAFLISTGVVALAEIGDKTQLLAFILAAKFRKPIPIILGVLVSTIANHAFAGALGAWIT 60
           L A L+S G V LAE+GD++QL+      ++R  + ++ GV ++    H  A A+G ++ 
Sbjct: 2   LAATLLSLGAVFLAELGDRSQLITMTYTLRYRWWV-VLTGVAIAAFTVHGVAVAIGHFLG 60

Query: 61  SLVSPETMRWILGVSFIGMAIWTLIPDKFDESE----ARFARFGVFGTTVIAFFLAEMGD 116
           S V       +  ++F+  A+W    D   +SE    A   R  +F T V +F LAE+GD
Sbjct: 61  STVPARPAACVSAIAFLIFAVWVWREDTASDSETSPTAAEPRLALF-TVVSSFALAELGD 119

Query: 117 KTQVATVALAAQYHAFVPVVAGTTLGMMIANVPAVLLGDRIAGKIPVRVVH 167
           KT +ATV LA+ +H +  V  GTTLGM++A+  A+  G  +  ++P R++ 
Sbjct: 120 KTTLATVTLASDHH-WAGVWIGTTLGMILADGLAIGAGLLLHRRLPERLLQ 169