BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0221.p         (129 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2532 [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetas...   107   8e-24
PA2979 [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase...    97   1e-20
VC1875 [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase...    96   1e-20
STM0988 [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetas...    94   7e-20
kdsB [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase E...    94   9e-20

>RSc2532 [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase Rso
           Ralstonia solanacearum
          Length = 268

 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 75/118 (63%), Gaps = 2/118 (1%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIK--ADVPMAT 58
           +TRADH SGTDR+AEVA  L L +DA+VVNVQGDEPLI P LI   A H++  AD  +AT
Sbjct: 70  LTRADHASGTDRLAEVATVLALPDDAIVVNVQGDEPLIAPTLIDNVAAHLRDHADCAIAT 129

Query: 59  AAHAIELLPEMFNPNVVKVVLDKEGCAMYFSRAARARARARATLRCATSALQARRLPA 116
           AAH I    ++FNPNVVKVVLD    A+ FSRA    AR   T          R LPA
Sbjct: 130 AAHPIRAAADIFNPNVVKVVLDAAERALLFSRAPLPWARDAWTPAALDQPAAERPLPA 187


>PA2979 [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase Pae
           Pseudomonas aeruginosa
          Length = 254

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 67/99 (67%), Gaps = 2/99 (2%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIKA--DVPMAT 58
           +TRA+H SGTDR+ EVA+ L LA DA+VVNVQGDEPLI P LI   A ++ A  +  +AT
Sbjct: 69  LTRAEHNSGTDRLEEVASRLGLASDAIVVNVQGDEPLIPPALIDQVAANLAAHPEAAIAT 128

Query: 59  AAHAIELLPEMFNPNVVKVVLDKEGCAMYFSRAARARAR 97
            A  I  +  +FNPNVVKV  D +G A+ FSRA    AR
Sbjct: 129 LAEPIHEVSALFNPNVVKVATDIDGLALTFSRAPLPWAR 167


>VC1875 [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase Vch
           Vibrio cholerae
          Length = 252

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHIKA-DVPMATA 59
           MT  +H SGT+R+AEV A + +  D +VVNVQGDEPLI P +I   A ++ A   PMAT 
Sbjct: 67  MTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATL 126

Query: 60  AHAIELLPEMFNPNVVKVVLDKEGCAMYFSRA 91
           A  IE   E+FNPN VKV+ DK G A+YFSRA
Sbjct: 127 AVEIEDEAEVFNPNAVKVITDKSGYALYFSRA 158


>STM0988 [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase Sty
           Salmonella typhimurium LT2
          Length = 248

 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHI-KADVPMATA 59
           MTRADH SGT+R+AEV      ++D V+VNVQGDEP+I   +I   A ++ +  V MAT 
Sbjct: 67  MTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQVGMATL 126

Query: 60  AHAIELLPEMFNPNVVKVVLDKEGCAMYFSRA 91
           A  I    E FNPN VKVVLD EG A+YFSRA
Sbjct: 127 AVPIHSAEEAFNPNAVKVVLDAEGYALYFSRA 158


>kdsB [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase Eco
           Escherichia coli K12
          Length = 248

 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 1   MTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAGHI-KADVPMATA 59
           MTRADH SGT+R+AEV      ++D V+VNVQGDEP+I   +I   A ++ +  V MAT 
Sbjct: 67  MTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATL 126

Query: 60  AHAIELLPEMFNPNVVKVVLDKEGCAMYFSRA 91
           A  I    E FNPN VKVVLD EG A+YFSRA
Sbjct: 127 AVPIHNAEEAFNPNAVKVVLDAEGYALYFSRA 158