BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0200.p (224 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2444 [L] COG2003 DNA repair proteins Rso Ralstonia solanacearum 262 4e-70 PA5319 [L] COG2003 DNA repair proteins Pae Pseudomonas aeruginosa 244 1e-64 VC0217 [L] COG2003 DNA repair proteins Vch Vibrio cholerae 219 3e-57 PM1152 [L] COG2003 DNA repair proteins Pmu Pasteurella multocida 212 5e-55 NMA1448 [L] COG2003 DNA repair proteins NmA Neisseria meningitid... 203 2e-52 >RSc2444 [L] COG2003 DNA repair proteins Rso Ralstonia solanacearum Length = 224 Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/224 (57%), Positives = 169/224 (75%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 MAI DWP +RPRE+L+ QG +LSDAELLA+FLRVG+ GKSAVDL R+++ HFGSL L Sbjct: 1 MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 A +F I+G+GPAKYAQL A+LE++RRAL EE+ G TL SP++V +L+L + Sbjct: 61 CHASRREFSAIHGMGPAKYAQLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHR 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 E F LFLDV++RLI EE+F+GTLT+A VYPREI K AL NA+ +IL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALHHNASALILSHNHPTGHV 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHGQL 224 EPS +DL+LT+ L +AL L++VRVLDH++V +SF EHG++ Sbjct: 181 EPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM 224 >PA5319 [L] COG2003 DNA repair proteins Pae Pseudomonas aeruginosa Length = 224 Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 124/224 (55%), Positives = 159/224 (70%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 M+I DWPE +RPRE+L+ QGA +LSDAELLA+FLR GVTG SAV+L R ++ FG L+AL Sbjct: 1 MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRAL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 A LA FCG GLG AKYAQLQAVLE+ RR LAE L + L SP+AV YL+ + Sbjct: 61 LEADLASFCGHLGLGVAKYAQLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHE 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 +E F LFLD ++R++ E +F+G++ ASVYPR++VK LA NAA +IL HNHPSG+ Sbjct: 121 QHEVFACLFLDTRHRVLSFEVLFQGSIDGASVYPRQVVKRTLAHNAAALILTHNHPSGDA 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHGQL 224 PS AD LT L++AL L++VRVLDH ++ S AE+G L Sbjct: 181 RPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL 224 >VC0217 [L] COG2003 DNA repair proteins Vch Vibrio cholerae Length = 224 Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 116/224 (51%), Positives = 149/224 (66%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 M++ P + PRE+L+++G SLSDAELLA+FLR G G + + L ++ FGSL+AL Sbjct: 1 MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRAL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 F A FC GLG AK+ QLQAVLE+++R LAE L G L+SP+ YL + + Sbjct: 61 FCASKEQFCRHKGLGEAKFVQLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDR 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 E+F +LFLD ++R+I E +F GT+ ASVYPRE+VK AL NAA VILAHNHPSG Sbjct: 121 QREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKRALHHNAAAVILAHNHPSGVA 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHGQL 224 EPS AD +T L+ ALGLVE+RVLDH VV SFAE G + Sbjct: 181 EPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI 224 >PM1152 [L] COG2003 DNA repair proteins Pmu Pasteurella multocida Length = 224 Score = 212 bits (539), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 104/210 (49%), Positives = 142/210 (67%) Query: 12 PRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQALFSARLADFCGI 71 PRE+L+R GA +L+D ELLA+FLR G+ G S + L R ++ HF SL+ L SA +FC + Sbjct: 12 PREKLLRFGAPALTDEELLAIFLRTGIKGCSVMQLSRHVLQHFHSLRGLMSATQTEFCQL 71 Query: 72 NGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGKAYESFVVLFLD 131 GLG ++ QLQA E+S+R L EEL + + V YLQ K E F VLFLD Sbjct: 72 KGLGITQFIQLQACTEMSKRYLQEELKLTQAFKNSENVRFYLQATLENKEREIFQVLFLD 131 Query: 132 VKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEPEPSSADLLLTQ 191 ++RLI+ EEMF GT+ +++PREI+K+AL NAA +ILAHNHPSG PEPS++D ++T Sbjct: 132 NQHRLIKQEEMFLGTINCTTIHPREIIKSALFCNAAALILAHNHPSGNPEPSASDKMVTT 191 Query: 192 TLQQALGLVEVRVLDHIVVAGRHTHSFAEH 221 +Q A LVE+R+LDH V+ +SFAE+ Sbjct: 192 KIQAAAELVEIRILDHFVIGKGCYYSFAEN 221 >NMA1448 [L] COG2003 DNA repair proteins NmA Neisseria meningitidis Z2491 Length = 225 Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 103/222 (46%), Positives = 137/222 (61%) Query: 1 MAITDWPEDQRPRERLIRQGAHSLSDAELLAVFLRVGVTGKSAVDLGRDMVGHFGSLQAL 60 M+I WPE +RPRE+L+ +GA +LSDAELLA+ LRVG G SAVDL R ++ FGSL L Sbjct: 1 MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRL 60 Query: 61 FSARLADFCGINGLGPAKYAQLQAVLELSRRALAEELTTGTTLSSPKAVTHYLQLLFHGK 120 SA + G+G A + Q V E+ RR LAEEL LS P V YL+ + Sbjct: 61 MSAEVGKLSAYKGMGTASFTQFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQE 120 Query: 121 AYESFVVLFLDVKNRLIEAEEMFRGTLTQASVYPREIVKAALARNAAGVILAHNHPSGEP 180 E V L L+ +N+LI E+ RGT+ + ++Y REIVK AL A +I+AHNHP G P Sbjct: 121 KVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKLALDEYADSLIIAHNHPGGSP 180 Query: 181 EPSSADLLLTQTLQQALGLVEVRVLDHIVVAGRHTHSFAEHG 222 EPS D++ T+ L QA+ LV+V +LDH +V + SF + G Sbjct: 181 EPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLG 222