BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0180.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3106 [NU] COG2165 Type II secretory pathway, pseudopilin PulG...   120   1e-27
VC2730 [NU] COG2165 Type II secretory pathway, pseudopilin PulG ...   103   2e-22
PA3101 [NU] COG2165 Type II secretory pathway, pseudopilin PulG ...   102   3e-22
YPO0813 [NU] COG2165 Type II secretory pathway, pseudopilin PulG...    97   1e-20
CC0176 [NU] COG2165 Type II secretory pathway, pseudopilin PulG ...    91   1e-18

>RSc3106 [NU] COG2165 Type II secretory pathway, pseudopilin PulG Rso
           Ralstonia solanacearum
          Length = 156

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 83/129 (64%), Gaps = 3/129 (2%)

Query: 24  GLSKLQMLTALAIIAVVAIVAAPRLINVVNHAHSPQIVTAEQDIAEIEKGLQLYKQDNGR 83
           G + ++++  + I+ ++A +  P++++  + A   +I+ A+QDIA I + L+LY+ DNGR
Sbjct: 22  GFTLIEIMVVVVILGILAALVVPKIMSRPDEA---RIIAAKQDIASISQALKLYRLDNGR 78

Query: 84  YPTIEQGLLALIVKPGRAPVPKEWKTGGYLDRLPRDPWGNAYAYRVSADGDSFDVFSFGA 143
           YPT EQGL AL+ KP   PVP  WK GGYL+RLP+DPWG+ Y Y         D+FS+GA
Sbjct: 79  YPTTEQGLAALVTKPTTEPVPNNWKGGGYLERLPKDPWGHPYQYLNPGVRGEVDIFSYGA 138

Query: 144 HGPDEGDDN 152
            G   G  N
Sbjct: 139 DGQPGGTAN 147


>VC2730 [NU] COG2165 Type II secretory pathway, pseudopilin PulG Vch Vibrio
           cholerae
          Length = 146

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 4/129 (3%)

Query: 22  QRGLSKLQMLTALAIIAVVAIVAAPRLINVVNHAHSPQIVTAEQDIAEIEKGLQLYKQDN 81
           Q G + L+++  + I+ ++A    P L+     A   + VT   DI  +E  L +YK DN
Sbjct: 7   QTGFTLLEVMVVVVILGILASFVVPNLLGNKEKADQQKAVT---DIVALENALDMYKLDN 63

Query: 82  GRYPTIEQGLLALIVKPGRAPVPKEWKTGGYLDRLPRDPWGNAYAYRVSADGDSFDVFSF 141
             YPT +QGL AL+ KP   P P+ ++ GGY+ RLP+DPWGN Y Y    D  + DVF+ 
Sbjct: 64  SVYPTTDQGLEALVTKP-TNPEPRNYREGGYIKRLPKDPWGNDYQYLSPGDKGTIDVFTL 122

Query: 142 GAHGPDEGD 150
           GA G + G+
Sbjct: 123 GADGQEGGE 131


>PA3101 [NU] COG2165 Type II secretory pathway, pseudopilin PulG Pae
           Pseudomonas aeruginosa
          Length = 148

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 3/131 (2%)

Query: 22  QRGLSKLQMLTALAIIAVVAIVAAPRLINVVNHAHSPQIVTAEQDIAEIEKGLQLYKQDN 81
           Q G + ++++  + I+ ++A +  P++++  + A   ++  A+ DI  I   L +YK DN
Sbjct: 12  QSGFTLIEIMVVVVILGILAALVVPQVMSRPDQA---KVTVAKGDIKAIAAALDMYKLDN 68

Query: 82  GRYPTIEQGLLALIVKPGRAPVPKEWKTGGYLDRLPRDPWGNAYAYRVSADGDSFDVFSF 141
             YP+ +QGL AL+ KP   P PK W   GYL +LP DPWGN Y Y        FD++S 
Sbjct: 69  FAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSL 128

Query: 142 GAHGPDEGDDN 152
           GA G + G DN
Sbjct: 129 GADGKEGGSDN 139


>YPO0813 [NU] COG2165 Type II secretory pathway, pseudopilin PulG Ype
           Yersinia pestis
          Length = 145

 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 76/132 (57%), Gaps = 3/132 (2%)

Query: 23  RGLSKLQMLTALAIIAVVAIVAAPRLINVVNHAHSPQIVTAEQDIAEIEKGLQLYKQDNG 82
           +G + L+++  + I+ ++A +  P L++  N A   + V+   DI+ +E  L +Y+ DNG
Sbjct: 7   KGFTLLEIMVVIVILGLLASLTIPSLMSNKNRADQQKAVS---DISALENALDMYRLDNG 63

Query: 83  RYPTIEQGLLALIVKPGRAPVPKEWKTGGYLDRLPRDPWGNAYAYRVSADGDSFDVFSFG 142
            YPT +QG+ AL+ KP   P+P+ + + GY+ RLP DPWGN+Y           D+FS G
Sbjct: 64  DYPTEQQGIAALVTKPNVPPLPQRYPSDGYIRRLPTDPWGNSYQMNNPGKHGQIDIFSIG 123

Query: 143 AHGPDEGDDNAG 154
                E +D+ G
Sbjct: 124 PDRLPETEDDIG 135


>CC0176 [NU] COG2165 Type II secretory pathway, pseudopilin PulG Ccr
           Caulobacter vibrioides
          Length = 150

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 3/127 (2%)

Query: 24  GLSKLQMLTALAIIAVVAIVAAPRLINVVNHAHSPQIVTAEQDIAEIEKGLQLYKQDNGR 83
           G + ++M+  + I+ ++A V A   INV+ +        A  D++ +E+ L+ Y+ D   
Sbjct: 17  GFTLVEMMVVIVILGLLATVVA---INVLPNQEKAMKGKARADVSVLEQALESYRLDIFA 73

Query: 84  YPTIEQGLLALIVKPGRAPVPKEWKTGGYLDRLPRDPWGNAYAYRVSADGDSFDVFSFGA 143
           +PT EQGL AL+  P        ++ GGY+ RLP+DPWGN Y YR      + DV+SFGA
Sbjct: 74  FPTTEQGLQALVAPPAGLTQVDRYREGGYIRRLPKDPWGNDYQYRAPGAHGAIDVYSFGA 133

Query: 144 HGPDEGD 150
            G + G+
Sbjct: 134 DGREGGE 140