BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0165.p         (187 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5277 [E] COG0019 Diaminopimelate decarboxylase Pae Pseudomonas...    99   4e-21
AGl2454 [E] COG0019 Diaminopimelate decarboxylase Atu Agrobacter...    99   5e-21
HI0727 [E] COG0019 Diaminopimelate decarboxylase Hin Haemophilus...    97   3e-20
RSc2979 [E] COG0019 Diaminopimelate decarboxylase Rso Ralstonia ...    96   4e-20
SMc00723 [E] COG0019 Diaminopimelate decarboxylase Sme Sinorhizo...    95   1e-19

>PA5277 [E] COG0019 Diaminopimelate decarboxylase Pae Pseudomonas
          aeruginosa
          Length = 415

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 9/97 (9%)

Query: 1  MSHFSYRDGVLHAENLPLNALAKQFGSPLYVYSKAALTANFSAYADACKKAGRTENADNG 60
          M  FSYRD  L AE + L+ +A++FG+P YVYS+A + A + AYADA   AG        
Sbjct: 1  MDTFSYRDAELFAEGVALSRIAERFGTPTYVYSRAHIEAQYRAYADAL--AGMPH----- 53

Query: 61 GALVCYSVKSNSNLAVLNVLGKLGSGFDIVSGGELLR 97
            LVC++VK+NSNL VLNVL +LG+GFDIVS GEL R
Sbjct: 54 --LVCFAVKANSNLGVLNVLARLGAGFDIVSRGELER 88


>AGl2454 [E] COG0019 Diaminopimelate decarboxylase Atu Agrobacterium
          tumefaciens strain C58 (Cereon)
          Length = 422

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 9/97 (9%)

Query: 1  MSHFSYRDGVLHAENLPLNALAKQFGSPLYVYSKAALTANFSAYADACKKAGRTENADNG 60
          M+HF Y DGVLHAEN+P+  +AK  G+P YVYS A L  ++  ++ A             
Sbjct: 1  MNHFGYIDGVLHAENVPVPEIAKAVGTPFYVYSTATLERHYKVFSGAFADV--------- 51

Query: 61 GALVCYSVKSNSNLAVLNVLGKLGSGFDIVSGGELLR 97
           A+VCY++K+NSN AVL  L KLG+G D+VSGGEL R
Sbjct: 52 DAMVCYAMKANSNQAVLKTLAKLGAGIDVVSGGELRR 88


>HI0727 [E] COG0019 Diaminopimelate decarboxylase Hin Haemophilus
           influenzae [P] COG1965 Protein implicated in iron
           transport, frataxin homolog Hin Haemophilus influenzae
          Length = 415

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 29/197 (14%)

Query: 1   MSHFSYRDGVLHAENLPLNALAKQFGSPLYVYSKAALTANFSAYADACKKAGRTENADNG 60
           M+ F Y+   L+AE++P+  LA+QFG+PLYVYS+A L  ++ A+  A           N 
Sbjct: 1   MNFFQYKHNKLYAEDMPVQQLAEQFGTPLYVYSRATLERHWHAFDSAFG---------NR 51

Query: 61  GALVCYSVKSNSNLAVLNVLGKLGSGFDIVSGGELLR--RXGFD---IVSGG------EL 109
             L+C++VKS SN+ VLN++ KLGSGFDIVS GEL R    G D   +V  G      E+
Sbjct: 52  PHLICFAVKSCSNIGVLNIMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEI 111

Query: 110 LRASARAFRCASIRTSTPRPILTS--------PPVSRKTSSASPTKTRWPAIATPPRCRT 161
           +RA     RC ++ + +    +           P+S + +      T  P I+T  +   
Sbjct: 112 MRALEVRIRCFNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTH-PYISTGLKENK 170

Query: 162 LTWSASTATSVRSCSTT 178
              S + A  V   ++T
Sbjct: 171 FGVSVNEAREVYKLAST 187


>RSc2979 [E] COG0019 Diaminopimelate decarboxylase Rso Ralstonia
           solanacearum
          Length = 451

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 65/91 (71%), Gaps = 9/91 (9%)

Query: 7   RDGVLHAENLPLNALAKQFGSPLYVYSKAALTANFSAYADACKKAGRTENADNGGALVCY 66
           +DG L  E + L A+A +FG+P YVYS+AALTAN+ AYA AC+  GR        A V Y
Sbjct: 40  QDGALMIEGVALEAIAARFGTPTYVYSRAALTANYRAYAAACE--GRN-------ARVQY 90

Query: 67  SVKSNSNLAVLNVLGKLGSGFDIVSGGELLR 97
           ++K+NSNLAVL +  +LG+GFDIVSGGEL R
Sbjct: 91  AMKANSNLAVLQIFAQLGAGFDIVSGGELRR 121


>SMc00723 [E] COG0019 Diaminopimelate decarboxylase Sme Sinorhizobium
          meliloti
          Length = 422

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 9/97 (9%)

Query: 1  MSHFSYRDGVLHAENLPLNALAKQFGSPLYVYSKAALTANFSAYADACKKAGRTENADNG 60
          M+HF YRDG+L+AE++PL  +A+  G+P Y YS A L  ++  ++ A             
Sbjct: 1  MNHFQYRDGILYAEDVPLTEIARAVGTPFYCYSTATLERHYKVFSQAFADV--------- 51

Query: 61 GALVCYSVKSNSNLAVLNVLGKLGSGFDIVSGGELLR 97
           A+VCY++K+NSN AVL  LG+LG+G D+VS GEL R
Sbjct: 52 DAMVCYAMKANSNQAVLKTLGRLGAGLDVVSEGELRR 88