BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0147.p (214 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0292 [TK] COG2197 Response regulator containing a CheY-like r... 234 2e-61 uvrY [TK] COG2197 Response regulator containing a CheY-like rece... 159 6e-39 RSc0192 [TK] COG2197 Response regulator containing a CheY-like r... 158 6e-39 STM1947 [TK] COG2197 Response regulator containing a CheY-like r... 158 1e-38 VC1213 [TK] COG2197 Response regulator containing a CheY-like re... 158 1e-38 >RSc0292 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 210 Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 108/212 (50%), Positives = 163/212 (76%), Gaps = 5/212 (2%) Query: 6 MTKILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDK 65 M ++L+ DDH +VRAG++ F+++ ++EV GEA++ EE + +RT +D+V+LDI+MPD+ Sbjct: 1 MIRVLIADDHEIVRAGLRQFLSEERDIEVAGEAASGEEVMEQLRTGTFDVVVLDISMPDR 60 Query: 66 SGVEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAINTILR 125 +G++ LK +++ P+LPVL+LS PE +YA+ ++R+GASGY+ KE+ +LV AI T+ + Sbjct: 61 NGIDTLKLVRQRHPDLPVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQ 120 Query: 126 GHKYISYGVAELLT---TDPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVK 182 G +Y+S VAELL P D +PLH+TLS+RE++IF KL +GQ V+ IA+EL LSVK Sbjct: 121 GRRYVSPTVAELLIGGLEKPTD--QPLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVK 178 Query: 183 TVSTYRSRVLQKMNMANNADIIYYAIKNNLID 214 TVSTYR+R+L+KM M +NAD+ YYAIKN L++ Sbjct: 179 TVSTYRTRILEKMGMKSNADLTYYAIKNGLVE 210 >uvrY [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Eco Escherichia coli K12 Length = 218 Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 139/212 (65%), Gaps = 4/212 (1%) Query: 6 MTKILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDK 65 M +L+VDDH +VRAG++ + DI ++V GEAS E+A++ RT D+VL+D++MP Sbjct: 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGI 60 Query: 66 SGVEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAINTILR 125 G+E ++I R ++ ++ML++H E+ +V+++GA+GY+ K A ++VSAI ++ Sbjct: 61 GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120 Query: 126 GHKYISYGVAE---LLTTDPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVK 182 G +YI+ +A+ L +P +E P +LS+RE +I + +GQ V +I+++L LS K Sbjct: 121 GQRYIASDIAQQMALSQIEPEKTESPF-ASLSERELQIMLMITKGQKVNEISEQLNLSPK 179 Query: 183 TVSTYRSRVLQKMNMANNADIIYYAIKNNLID 214 TV++YR R+ K+N+ + ++ + AI++ L + Sbjct: 180 TVNSYRYRMFSKLNIHGDVELTHLAIRHGLCN 211 >RSc0192 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 215 Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 80/209 (38%), Positives = 140/209 (66%), Gaps = 1/209 (0%) Query: 6 MTKILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDK 65 M ++++ DDHAV+R GV+H + + EV EAS + ++LVR + +++LD++MP + Sbjct: 1 MIRVMIADDHAVMRDGVRHILERAGDFEVACEASDGTQVLQLVRDHQPQVIVLDLSMPGR 60 Query: 66 SGVEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAINTILR 125 SG+E+L+Q+ + P + VL+L+MH E +Y + R+GA+ Y+ KE+ AT+LV+A+ + R Sbjct: 61 SGLELLRQLHDDHPTVRVLVLTMHAEEQYVARAFRAGAAAYLTKESAATELVTALQKVAR 120 Query: 126 GHKYISYGVAELLTTDPVD-SEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 184 G Y+S +AE L + S++ H LS RE E++ +L G+ +T+IA LC+S KT+ Sbjct: 121 GGTYVSPPMAEKLAHSLGETSDEAAHMRLSDREMEVYRRLVLGEPLTEIAASLCVSAKTI 180 Query: 185 STYRSRVLQKMNMANNADIIYYAIKNNLI 213 STY+ R++ K+ +++ A ++ YAI++ L Sbjct: 181 STYKMRLMDKLQLSSEAALVRYAIRHRLF 209 >STM1947 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sty Salmonella typhimurium LT2 Length = 218 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 137/212 (64%), Gaps = 4/212 (1%) Query: 6 MTKILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDK 65 M +L+VDDH +VRAG++ + DI ++V GEA E+A++ RT D+VL+D+ MP Sbjct: 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGI 60 Query: 66 SGVEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAINTILR 125 G+E ++I R ++ V+ML++H E+ +V+++GA+GY+ K A ++VSAI ++ Sbjct: 61 GGLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120 Query: 126 GHKYISYGVAE---LLTTDPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVK 182 G +YI+ +A+ L +P +E P +LS+RE +I + +GQ V +I+++L LS K Sbjct: 121 GQRYIASDIAQQMALSQIEPAKTETPF-ASLSERELQIMLMITKGQKVNEISEQLNLSPK 179 Query: 183 TVSTYRSRVLQKMNMANNADIIYYAIKNNLID 214 TV++YR R+ K+N+ + ++ + AI++ L + Sbjct: 180 TVNSYRYRMFSKLNIHGDVELTHLAIRHGLCN 211 >VC1213 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Vch Vibrio cholerae Length = 214 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 136/211 (64%), Gaps = 3/211 (1%) Query: 6 MTKILVVDDHAVVRAGVQHFIADIPNMEVGGEASTAEEAIRLVRTQEWDIVLLDIAMPDK 65 M + +VDDH +VR G++ I D+ M+V GEA + EEA++ RT D++L+D+ MP Sbjct: 1 MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGI 60 Query: 66 SGVEVLKQIKREKPNLPVLMLSMHPESRYAVQVLRSGASGYVQKEALATDLVSAINTILR 125 G+E K++ R P++ +++L++H E+ + +V+++GA+GY+ K A ++V+AI + Sbjct: 61 GGLEATKKLLRVNPDIKIIVLTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHS 120 Query: 126 GHKYISYGVAELLTTDPVD--SEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKT 183 G +YIS +A+ + SE P + LS+RE +I + +GQ VT I+++L LS KT Sbjct: 121 GQRYISPEIAQQMALSQFSPASENPFAD-LSERELQIMLMITKGQKVTDISEQLSLSPKT 179 Query: 184 VSTYRSRVLQKMNMANNADIIYYAIKNNLID 214 V++YR R+ K+N+ + ++ + AI++ ++D Sbjct: 180 VNSYRYRLFAKLNINGDVELTHLAIRHGILD 210