BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0115.p (442 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0735 [U] COG0823 Periplasmic component of the Tol biopolymer ... 471 e-132 XF1897 [U] COG0823 Periplasmic component of the Tol biopolymer t... 320 5e-87 PA0972 [U] COG0823 Periplasmic component of the Tol biopolymer t... 318 1e-86 YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer ... 297 4e-80 VC1836 [U] COG0823 Periplasmic component of the Tol biopolymer t... 292 1e-78 >RSc0735 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Rso Ralstonia solanacearum Length = 432 Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust. Identities = 235/427 (55%), Positives = 309/427 (72%), Gaps = 7/427 (1%) Query: 20 GFRRLTGVALTVMGIAAASAAHAELRFEISGVGASQIPVAIAAFPGEEGAPQQITSIVKA 79 G RR + L + + A A+L EI+G G+SQ P+AIA F GE PQ IT+IV+A Sbjct: 9 GLRRSAWIGLLM--VLCVGVARAQLYVEIAGAGSSQYPIAIANFQGESQIPQDITAIVRA 66 Query: 80 DLARSGVFKLIDNSDSL-SDASAINYGDWKNRGANALAVGSVQRLADGRFDVRYRLFDTI 138 DL SG F +D + ++ D+ A + G WK+RGA A G+V R D R+++R+RL+DT Sbjct: 67 DLVHSGRFSNVDVAGAVVPDSPAPDLGAWKSRGAAAFVGGTVTRNGD-RYEIRFRLYDTA 125 Query: 139 KAAQLSALSFGSQPQLMRLTAHKIADDIYEKLTGIPGIFSTRIAYVTRSGKEYRLEVADA 198 K L L+ +RL AH+IAD IY+KL G G+F+TR++YV++ G+ Y+L+++D+ Sbjct: 126 KGESLGGLALTRGEGQLRLAAHEIADYIYQKLIGDRGVFATRLSYVSKVGRRYQLQISDS 185 Query: 199 DGEGVQVALRSNEPIISPSWSPDGGKVAYVSFEAKKPVIYIQNLVTRQRTLVANFKGSNS 258 DG QVAL SNEPIISP+WSPDG KVAYVSFE++KPV+Y+ +L++ +R +++N KG+NS Sbjct: 186 DGANPQVALTSNEPIISPAWSPDGTKVAYVSFESRKPVVYVHDLISGRRAVISNQKGNNS 245 Query: 259 APAWAPDGQRLAVALTRDGLTQVYVINADGSGLRRLTNTAGIDTEPRFSPDGNYVYFTSD 318 APAW+PDG+R+AVAL+RDG TQ+Y +NADGSGLRRLT ++ IDTEP FSPDG +YFTSD Sbjct: 246 APAWSPDGRRVAVALSRDGNTQIYQVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYFTSD 305 Query: 319 RSGGPQIYKVSPNG---GDAQRVTFGGSYNISPRISPDGKTLAFISRREGKFQLYALDLT 375 R G PQIY++ G G AQRVTF G YN SPR+SPDGK LA+ISR G F+LY DL+ Sbjct: 306 RGGAPQIYRMPTEGEDAGSAQRVTFKGGYNTSPRVSPDGKLLAYISRVGGAFKLYVQDLS 365 Query: 376 NGQEQRLSDTVKDESPSFSPNGKYIMYATESGRRGSLAIVSTDGRIKQRLTTQVGDIREP 435 NG L+DT DESPSF+ NGK+I+YAT G R LA VSTDGR +Q L+ Q G +REP Sbjct: 366 NGDVTGLTDTSYDESPSFAANGKFILYATRVGGRSVLAAVSTDGRTRQILSLQAGTVREP 425 Query: 436 TWGPFMK 442 WGPFM+ Sbjct: 426 AWGPFMQ 432 >XF1897 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Xfa Xylella fastidiosa 9a5c Length = 430 Score = 320 bits (820), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 175/409 (42%), Positives = 246/409 (60%), Gaps = 12/409 (2%) Query: 44 LRFEISGVGASQIPVAIAAFPGEE--GAP-QQITSIVKADLARSGVFKLIDNSDSL---S 97 L +I G + P+A+ P + GAP ++S+V ADL RSG F+ + + + Sbjct: 18 LTIDIVGGNTAATPIAVLPMPYHDSVGAPATDVSSVVAADLNRSGQFRTLPLGQIIERPT 77 Query: 98 DASAINYGDWKNRGANALAVGSVQRLADGRFDVRYRLFDTIKAAQLSALSFGSQPQLMRL 157 S I + W+ + + VG V G + V Y LFD ++ L+ ++ MR Sbjct: 78 HGSEIRFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDVRNGKRMLGLAMTARASAMRD 137 Query: 158 TAHKIADDIYEKLTGIPGIFSTRIAYVTRSGKE----YRLEVADADGEGVQVALRSNEPI 213 AH++AD IYEK+TG+ G F TRIAYVT SG Y L VAD+DG Q +RS EP+ Sbjct: 138 VAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYALMVADSDGYNPQTIVRSAEPL 197 Query: 214 ISPSWSPDGGKVAYVSFEAKKPVIYIQNLVTRQRTLVANFKGSNSAPAWAPDGQRLAVAL 273 +SP WSPDG K+AYVSFE IYIQ++ T R LV++F+G N+AP++APDG R+A++L Sbjct: 198 LSPDWSPDGKKLAYVSFEKGGSSIYIQDIATGSRELVSSFRGINAAPSFAPDGHRIALSL 257 Query: 274 TRDGLTQVYVINADGSGLRRLTNTAGIDTEPRFSPDGNYVYFTSDRSGGPQIYKVSPNGG 333 +R G ++YV++ L +LTN+ GIDTEP +S DG ++YFTSDR G PQIYKV+ GG Sbjct: 258 SRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPAWSSDGKFIYFTSDRGGRPQIYKVASVGG 317 Query: 334 DAQRVTFGGSYNISPRISPDGKTLAFISRREGKFQLYALDLTNGQE--QRLSDTVKDESP 391 A RVTF G+YN + +S D K + +++ +D ++G LS DESP Sbjct: 318 TATRVTFQGNYNATTSVSYDDKKIVVAQGSGNVYRIAMMDQSSGSTVWNTLSTGSLDESP 377 Query: 392 SFSPNGKYIMYATESGRRGSLAIVSTDGRIKQRLTTQVGDIREPTWGPF 440 SF+PN ++YA G RG L VS D R++QRL + D+REP WGP+ Sbjct: 378 SFAPNASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREPAWGPY 426 >PA0972 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Pae Pseudomonas aeruginosa Length = 432 Score = 318 bits (816), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 174/399 (43%), Positives = 246/399 (61%), Gaps = 13/399 (3%) Query: 56 IPVAIAAFPGEEG--APQQITSIVKADLARSGVFKLIDNSDSLSD---ASAINYGDWKNR 110 IP+A+ F + G P+ +++I+ DL SG F+ + + +S AS + + DWK Sbjct: 35 IPIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQASEVIFRDWKAV 94 Query: 111 GANALAVGSVQRLADGRFDVRYRLFDTIKAAQLSALSFGSQPQLMRLTAHKIADDIYEKL 170 G N + VG++ A GR V+Y LFD Q+ S +R +H IAD +EKL Sbjct: 95 GVNYVMVGNIVP-AGGRLQVQYALFDVGTEQQVLTGSVTGSTDQLRDMSHYIADQSFEKL 153 Query: 171 TGIPGIFSTRIAYVTRS-----GKEYRLEVADADGEGVQVALRSNEPIISPSWSPDGGKV 225 TGI G FST++ YVT Y L+ +D DG L+S EPI+SP +SPDG ++ Sbjct: 154 TGIKGAFSTKMLYVTAERFSVDNTRYTLQRSDYDGARPVTLLQSREPIVSPRFSPDGRRI 213 Query: 226 AYVSFEAKKPVIYIQNLVTRQRTLVANFKGSNSAPAWAPDGQRLAVALTRDGLTQVYVIN 285 AYVSFE K+P I+IQ + T +R + NF+G N APA++PDG RLA L+RDG ++YV++ Sbjct: 214 AYVSFEQKRPRIFIQYVDTGRREQITNFEGLNGAPAFSPDGNRLAFVLSRDGNPEIYVMD 273 Query: 286 ADGSGLRRLTNTAGIDTEPRFSPDGNYVYFTSDRSGGPQIYKVSPNGGDAQRVTFGGSYN 345 LRRLTN IDTEP + DG+ +YFTSDR G PQIYK++ N G RVTF G+YN Sbjct: 274 LGSRALRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNVNSGAVDRVTFIGNYN 333 Query: 346 ISPRISPDGKTLAFISRREG--KFQLYALDLTNGQEQRLSDTVKDESPSFSPNGKYIMYA 403 +P++S D KTL + R++G FQ+ A DL G + LS+T D+SP+ +PNG ++YA Sbjct: 334 ANPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTLDDSPTVAPNGTMLIYA 393 Query: 404 TESGRRGSLAIVSTDGRIKQRLTTQVGDIREPTWGPFMK 442 T RG L +VS +GR++ L T GD+REP+W P++ Sbjct: 394 TRQQDRGVLMLVSINGRVRIPLPTAQGDVREPSWSPYLN 432 >YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Ype Yersinia pestis Length = 430 Score = 297 bits (760), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 173/425 (40%), Positives = 249/425 (58%), Gaps = 11/425 (2%) Query: 27 VALTVMGIAAASAAHAELRFEISGVGASQIPVAIAAFP--GEEGAPQQITSIVKADLARS 84 VAL + + AS HAE+R EI+ S P+ + F G P++I +IV ADL S Sbjct: 7 VALGFL-VLWASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNS 65 Query: 85 GVFKLIDNS---DSLSDASAINYGDWKNRGANALAVGSVQRLADGRFDVRYRLFDTIKAA 141 G F ID + S A+ + W G +A+ VG VQ ADG + V Y+L DT +A Sbjct: 66 GKFNPIDAARMPQQPSTAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDTSGSA 125 Query: 142 Q--LSALSFGSQPQLMRLTAHKIADDIYEKLTGIPGIFSTRIAYVTRS--GK-EYRLEVA 196 L+ + Q +R +AH ++D+++EKLTGI G F TRIAYV ++ GK + L V+ Sbjct: 126 GSILAQNQYKVTKQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKTNGGKFPHELRVS 185 Query: 197 DADGEGVQVALRSNEPIISPSWSPDGGKVAYVSFEAKKPVIYIQNLVTRQRTLVANFKGS 256 D DG V RS EP++SP+WSPDG K+AYV+FE+ K + IQ L VA+F Sbjct: 186 DYDGYNQFVVHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVASFPRH 245 Query: 257 NSAPAWAPDGQRLAVALTRDGLTQVYVINADGSGLRRLTNTAGIDTEPRFSPDGNYVYFT 316 N APA++PDG +LA AL++ G +YV++ + ++T+ +TEP + PD + +T Sbjct: 246 NGAPAFSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYT 305 Query: 317 SDRSGGPQIYKVSPNGGDAQRVTFGGSYNISPRISPDGKTLAFISRREGKFQLYALDLTN 376 SD+ G PQ+YKV+ NGG QR+T+ GS N + +SPDGK L +S G + DL Sbjct: 306 SDQGGRPQVYKVNINGGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLET 365 Query: 377 GQEQRLSDTVKDESPSFSPNGKYIMYATESGRRGSLAIVSTDGRIKQRLTTQVGDIREPT 436 G Q L+DT+ DE+PS +PNG ++Y++ G L +VSTDGR K RL G ++ P Sbjct: 366 GAVQVLTDTLLDETPSIAPNGTMVIYSSTQGLGSVLQLVSTDGRFKARLPATDGQVKFPA 425 Query: 437 WGPFM 441 W P++ Sbjct: 426 WSPYL 430 >VC1836 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Vch Vibrio cholerae Length = 450 Score = 292 bits (747), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 167/450 (37%), Positives = 258/450 (57%), Gaps = 30/450 (6%) Query: 21 FRRLTGVALTVMGIAAASAAHAELRFEISGVGASQIPVAIAAF--PGEEGAPQQITSIVK 78 F+RL V L ++G ++ A+A L I+ S P+AI F G P+ +++++ Sbjct: 2 FKRLVFV-LMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIA 60 Query: 79 ADLARSGVFKLIDNS---DSLSDASAINYGDWKNRGANALAVGSVQRLADGRFDVRYRLF 135 +DL RSG F + S + +N+G W + G ++L G++ + A+G + + Y+L Sbjct: 61 SDLQRSGKFSPVPTSKMPQTPYSEEQVNFGKWTSMGVDSLLTGTITQNAEGSYVISYQLV 120 Query: 136 DTIKA----AQLSALSFGSQPQL-----------------MRLTAHKIADDIYEKLTGIP 174 D ++ Q ALS Q L MR AH+IAD +YE+LTG Sbjct: 121 DIVRGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGER 180 Query: 175 GIFSTRIAYVTRSGKE---YRLEVADADGEGVQVALRSNEPIISPSWSPDGGKVAYVSFE 231 G F TRIAYV + K+ Y+L +AD DG ++ LRS +P++SP+WSPDG +AYVSF+ Sbjct: 181 GAFLTRIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQ 240 Query: 232 AKKPVIYIQNLVTRQRTLVANFKGSNSAPAWAPDGQRLAVALTRDGLTQVYVINADGSGL 291 + IY+ N+ + +R + +F N AP ++PDG+ LA+ L++ G QVY ++ L Sbjct: 241 NGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRL 300 Query: 292 RRLTNTAGIDTEPRFSPDGNYVYFTSDRSGGPQIYKVSPNGGDAQRVTFGGSYNISPRIS 351 +T+ +TEP + PDG + FTSDR G PQIY+V+ +GG+ +R+T+ GS N+ +I+ Sbjct: 301 TEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQIT 360 Query: 352 PDGKTLAFISRREGKFQLYALDLTNGQEQRLSDTVKDESPSFSPNGKYIMYATESGRRGS 411 PDGK L ++R + F L DL G Q L+ T+ DESPS +PNG ++Y++ + Sbjct: 361 PDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANV 420 Query: 412 LAIVSTDGRIKQRLTTQVGDIREPTWGPFM 441 L++VS DGR K RL G +R P W PF+ Sbjct: 421 LSMVSIDGRFKARLPATNGRVRAPAWSPFL 450