BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0107.p         (147 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0728 [K] COG1327 Predicted transcriptional regulator, consist...   196   2e-50
VC2272 [K] COG1327 Predicted transcriptional regulator, consists...   150   8e-37
PA4057 [K] COG1327 Predicted transcriptional regulator, consists...   150   1e-36
ybaD [K] COG1327 Predicted transcriptional regulator, consists o...   147   5e-36
ZybaD [K] COG1327 Predicted transcriptional regulator, consists ...   147   5e-36

>RSc0728 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Rso Ralstonia
           solanacearum
          Length = 149

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/136 (68%), Positives = 115/136 (84%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           +DTR+SEEGD +RRRRRC +CD+RFTTYERIEL  P +VKKNGSR ++D +K++ S+ LA
Sbjct: 14  IDTRMSEEGDTVRRRRRCESCDRRFTTYERIELFFPAVVKKNGSRVDYDRNKVKDSMRLA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           LRKRPVSAEA+D AI  I+EKLLS G +E+ S ++GELVMRELKRLDKI YIRFASVY+S
Sbjct: 74  LRKRPVSAEAIDEAIARIEEKLLSHGEKEIGSDRIGELVMRELKRLDKIGYIRFASVYRS 133

Query: 121 FEDVTEFQDAIAEVGQ 136
           FEDV+EF+D + E  Q
Sbjct: 134 FEDVSEFRDMLDEFRQ 149


>VC2272 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Vch Vibrio cholerae
          Length = 156

 Score =  150 bits (379), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 99/134 (73%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           +D+R+  +G  +RRRR+C  C++RFTT+E  EL MP ++K NG+R  FD  K+   L  A
Sbjct: 21  IDSRLVADGHQVRRRRQCLACNERFTTFETAELVMPRVIKSNGNREPFDEEKMIGGLQRA 80

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           L KRPVSA+A++ AI +I+ KL ++G REV S  +G LVM +LK LDK+AYIRFASVY+S
Sbjct: 81  LEKRPVSADAIELAISTIKSKLRATGEREVPSKLIGNLVMEQLKVLDKVAYIRFASVYRS 140

Query: 121 FEDVTEFQDAIAEV 134
           FEDV EF + IA++
Sbjct: 141 FEDVREFGEEIAKL 154


>PA4057 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Pae Pseudomonas
           aeruginosa
          Length = 154

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 101/137 (73%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           +D+R+  EGD +RRRR C  C +RFTT+E  EL MP ++K++GSR  FD  KLRA +  A
Sbjct: 14  IDSRLVAEGDQVRRRRECLACGERFTTFETAELVMPRLIKQDGSRQPFDEDKLRAGMQRA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           L KRPVS E ++AAI  I+ +L ++G RE+ S  +GELVM EL++LD++AYIRFASVY+ 
Sbjct: 74  LEKRPVSVERLEAAIGHIKHQLRATGEREIKSRVLGELVMAELQKLDEVAYIRFASVYRR 133

Query: 121 FEDVTEFQDAIAEVGQE 137
           F+D+ EF++ I  + +E
Sbjct: 134 FQDLNEFREEIERLARE 150


>ybaD [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Eco Escherichia coli K12
          Length = 149

 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 98/132 (74%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           +D+R+  EG ++RRRR+C  C++RFTT+E  EL MP +VK N  R  F+  KLR+ ++ A
Sbjct: 14  IDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREPFNEEKLRSGMLRA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           L KRPVS++ V+ AI  I+ +L ++G REV S  +G LVM +LK+LDK+AYIRFASVY+S
Sbjct: 74  LEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLDKVAYIRFASVYRS 133

Query: 121 FEDVTEFQDAIA 132
           FED+ EF + IA
Sbjct: 134 FEDIKEFGEEIA 145


>ZybaD [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains EcZ Escherichia coli
           O157:H7 EDL933
          Length = 149

 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 98/132 (74%)

Query: 1   LDTRISEEGDAIRRRRRCANCDKRFTTYERIELTMPVIVKKNGSRSEFDPSKLRASLMLA 60
           +D+R+  EG ++RRRR+C  C++RFTT+E  EL MP +VK N  R  F+  KLR+ ++ A
Sbjct: 14  IDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREPFNEEKLRSGMLRA 73

Query: 61  LRKRPVSAEAVDAAIQSIQEKLLSSGAREVVSGQVGELVMRELKRLDKIAYIRFASVYKS 120
           L KRPVS++ V+ AI  I+ +L ++G REV S  +G LVM +LK+LDK+AYIRFASVY+S
Sbjct: 74  LEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLDKVAYIRFASVYRS 133

Query: 121 FEDVTEFQDAIA 132
           FED+ EF + IA
Sbjct: 134 FEDIKEFGEEIA 145