BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0087.p (220 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0908 [F] COG0283 Cytidylate kinase Rso Ralstonia solanacearum 269 3e-72 PA3163 [F] COG0283 Cytidylate kinase Pae Pseudomonas aeruginosa 220 2e-57 HI1219 [F] COG0283 Cytidylate kinase Hin Haemophilus influenzae 211 7e-55 VC1916 [F] COG0283 Cytidylate kinase Vch Vibrio cholerae 207 1e-53 YPO1391 [F] COG0283 Cytidylate kinase Ype Yersinia pestis 206 4e-53 >RSc0908 [F] COG0283 Cytidylate kinase Rso Ralstonia solanacearum Length = 230 Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 136/211 (64%), Positives = 157/211 (74%) Query: 7 PVIAIDGPTASGKGTVAQRVAQQLGFHYLDSGALYRLTALSAIRRGIEMNDEHGLAKSAE 66 PVIAIDGPTASGKGTVA ++A LGFHYLDSG+LYRL A +IR I+ +D + L + A Sbjct: 11 PVIAIDGPTASGKGTVAHQIADLLGFHYLDSGSLYRLVAFVSIRENIDDHDVNSLVRIAS 70 Query: 67 HLNCHFDGGHIFLANEDVSQAIRAEEVGNTASKIAVLATVRHALYGLQLSFRKAPGLVAD 126 L+ F HI+L EDVS A+R E VGN AS IAV VR AL Q +F +APGLVAD Sbjct: 71 ELDVRFKADHIWLKGEDVSLALRHESVGNQASAIAVHGPVREALRARQRAFLEAPGLVAD 130 Query: 127 GRDMGTVIFPHAPLKVFLTASVEARAQRRYKQLIDKGFPANMEDLSKDLRERDARDMNRA 186 GRDMGTVIFP A LKVFLTASV+ARA+RRYKQLI KGF A +E LS+DL RD RD R+ Sbjct: 131 GRDMGTVIFPEAVLKVFLTASVQARAERRYKQLIAKGFSATVESLSRDLEARDLRDRTRS 190 Query: 187 SAPLKPAEGAYLLDTSDMTADEAVKQVLSWY 217 APL+PAE A LLD+SDM+ DE V QVL WY Sbjct: 191 VAPLRPAEAARLLDSSDMSVDEVVAQVLDWY 221 >PA3163 [F] COG0283 Cytidylate kinase Pae Pseudomonas aeruginosa Length = 229 Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/220 (52%), Positives = 155/220 (70%), Gaps = 7/220 (3%) Query: 1 MNTANIPVIAIDGPTASGKGTVAQRVAQQLGFHYLDSGALYRLTALSAIRRGIEMNDEHG 60 MN A +P++AIDGP+ +GKGTVA +A++LG++ LDSGALYRL A +A+ G+++ +E Sbjct: 1 MNGA-VPMLAIDGPSGAGKGTVAGLLARRLGWNLLDSGALYRLLAFAAVNHGVDLTNEEA 59 Query: 61 LAKSAEHLNCHF---DGGH---IFLANEDVSQAIRAEEVGNTASKIAVLATVRHALYGLQ 114 L A HL+ F DG H I L E+V+ IR E+VG AS++A L VR AL Q Sbjct: 60 LKVLAAHLDVQFVAADGSHGQRIILEGEEVTDVIRTEQVGAGASQVAALPAVRDALLQRQ 119 Query: 115 LSFRKAPGLVADGRDMGTVIFPHAPLKVFLTASVEARAQRRYKQLIDKGFPANMEDLSKD 174 +FR+APGLVADGRDMGTV+FP APLK+FLTAS E RA+RRY QL KG + L ++ Sbjct: 120 RAFREAPGLVADGRDMGTVVFPDAPLKIFLTASAEERARRRYLQLKAKGADVDQSALLEE 179 Query: 175 LRERDARDMNRASAPLKPAEGAYLLDTSDMTADEAVKQVL 214 +RERD RD RA APLKPA+ A LLD+++M+ + V+ ++ Sbjct: 180 IRERDERDSQRAVAPLKPADDAILLDSTEMSIEAVVETII 219 >HI1219 [F] COG0283 Cytidylate kinase Hin Haemophilus influenzae Length = 231 Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 106/213 (49%), Positives = 148/213 (69%), Gaps = 4/213 (1%) Query: 8 VIAIDGPTASGKGTVAQRVAQQLGFHYLDSGALYRLTALSAIRRGIEMNDEHGLAKSAEH 67 +I +DGP+ +GKGT+ +A++LG+ LDSGA+YR+TAL+A++R ++ +E LA+ A H Sbjct: 2 IITVDGPSGAGKGTLCYALAEKLGYALLDSGAIYRVTALAALQRKTDLTNETDLAELARH 61 Query: 68 LNCHF--DGGH--IFLANEDVSQAIRAEEVGNTASKIAVLATVRHALYGLQLSFRKAPGL 123 L+ F G I LA DVS+ IR +EV + ASK+AV VR AL LQ F K GL Sbjct: 62 LDIQFIPQNGEVSILLAGMDVSRLIRTQEVADAASKVAVFQKVRSALLQLQQDFAKNDGL 121 Query: 124 VADGRDMGTVIFPHAPLKVFLTASVEARAQRRYKQLIDKGFPANMEDLSKDLRERDARDM 183 +ADGRDMGTV+FP+A +K+FL AS E RA+RRYKQL +KG N + +++ERD RD Sbjct: 122 IADGRDMGTVVFPNAQVKLFLDASAEERAKRRYKQLQNKGINGNFAQILAEIKERDFRDR 181 Query: 184 NRASAPLKPAEGAYLLDTSDMTADEAVKQVLSW 216 NR APLKPA+ A LLD++ ++ DE + Q L++ Sbjct: 182 NREVAPLKPADDALLLDSTTLSIDEVIDQALAY 214 >VC1916 [F] COG0283 Cytidylate kinase Vch Vibrio cholerae Length = 229 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 105/218 (48%), Positives = 144/218 (66%), Gaps = 4/218 (1%) Query: 3 TANIPVIAIDGPTASGKGTVAQRVAQQLGFHYLDSGALYRLTALSAIRRGIEMNDEHGLA 62 +++ PV+ +DGP+ +GKGT+ +A++LGF LDSGA+YR+ AL+A+ G+++ E L Sbjct: 6 SSHTPVVTVDGPSGAGKGTLCMLLAKKLGFQLLDSGAIYRVLALAALHHGVDLESEDALV 65 Query: 63 KSAEHLNCHF----DGGHIFLANEDVSQAIRAEEVGNTASKIAVLATVRHALYGLQLSFR 118 A HL+ F D + L EDVS+ +R EE G ASK+A L VR AL Q +F Sbjct: 66 PLATHLDVQFIAEGDLVKVILEGEDVSRELRKEETGMAASKVAALPRVREALLRRQRAFA 125 Query: 119 KAPGLVADGRDMGTVIFPHAPLKVFLTASVEARAQRRYKQLIDKGFPANMEDLSKDLRER 178 GLVADGRDMGTV+FP A K+FL AS E RA+RR+KQL KG + L +++ER Sbjct: 126 SGIGLVADGRDMGTVVFPAAEAKIFLDASAEERARRRFKQLQLKGLDVKFDALLSEIQER 185 Query: 179 DARDMNRASAPLKPAEGAYLLDTSDMTADEAVKQVLSW 216 D RD NRA APL+PAE A +LD++ +T DE V+Q L + Sbjct: 186 DDRDRNRAVAPLRPAEDALVLDSTTLTIDEVVEQALQY 223 >YPO1391 [F] COG0283 Cytidylate kinase Ype Yersinia pestis Length = 230 Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 146/218 (66%), Gaps = 4/218 (1%) Query: 3 TANIPVIAIDGPTASGKGTVAQRVAQQLGFHYLDSGALYRLTALSAIRRGIEMNDEHGLA 62 TA PVI +DGP+ +GKGT+ + +A+ L + LDSGA+YR+ AL+A+ ++++ E L Sbjct: 2 TAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALV 61 Query: 63 KSAEHLNCHFDGGH----IFLANEDVSQAIRAEEVGNTASKIAVLATVRHALYGLQLSFR 118 A HL+ F + + L EDVS IR E VGNTAS+ A VR AL Q +FR Sbjct: 62 PLAAHLDVRFVSQNGQLQVILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFR 121 Query: 119 KAPGLVADGRDMGTVIFPHAPLKVFLTASVEARAQRRYKQLIDKGFPANMEDLSKDLRER 178 +APGL+ADGRDMGT++FP AP+K+FL AS + RA RR QL ++GF N E L +++ER Sbjct: 122 EAPGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQER 181 Query: 179 DARDMNRASAPLKPAEGAYLLDTSDMTADEAVKQVLSW 216 D RD NR+ APL PA A +LD++ M+ ++ ++Q L++ Sbjct: 182 DNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAY 219