BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0071.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1194 [L] COG0353 Recombinational DNA repair protein (RecF pat...   258   4e-69
PA1534 [L] COG0353 Recombinational DNA repair protein (RecF path...   182   4e-46
PM0206 [L] COG0353 Recombinational DNA repair protein (RecF path...   180   2e-45
VC1056 [L] COG0353 Recombinational DNA repair protein (RecF path...   177   8e-45
HI0443 [L] COG0353 Recombinational DNA repair protein (RecF path...   176   2e-44

>RSc1194 [L] COG0353 Recombinational DNA repair protein (RecF pathway) Rso
           Ralstonia solanacearum
          Length = 207

 Score =  258 bits (660), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 152/173 (87%), Gaps = 4/173 (2%)

Query: 1   MAYHLLQHDRDGALQLSRALAQAAETIRHCALCNTFTEQVICDTCQDGGRDTTTLCVVET 60
           MAYHLLQHDR+GA +L+ ALA+AAE+I HC+ CNTFTEQ +C+TC D  RD + LCVVET
Sbjct: 33  MAYHLLQHDREGASRLAEALAEAAESIHHCSRCNTFTEQDVCETCLDPRRDASVLCVVET 92

Query: 61  PSDQLMIEQTLTFKGLYFVLMGRLSPLDGVGPKDIHIEKLITRATD----GVVAEVVLAT 116
           P+DQ+MIEQTLT++G YFVLMGRLSPLD +GPK+IH+E+L+ RATD    G  AEV+LAT
Sbjct: 93  PADQMMIEQTLTYRGQYFVLMGRLSPLDNIGPKEIHLERLLARATDPALGGPCAEVILAT 152

Query: 117 NFTNEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRR 169
           NFT+EGEATAHYI E LKARG+KVSRLARGVPVGGELEYVDAGTIARA+LDRR
Sbjct: 153 NFTSEGEATAHYIGEMLKARGIKVSRLARGVPVGGELEYVDAGTIARAVLDRR 205


>PA1534 [L] COG0353 Recombinational DNA repair protein (RecF pathway) Pae
           Pseudomonas aeruginosa
          Length = 198

 Score =  182 bits (461), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 1/169 (0%)

Query: 1   MAYHLLQHDRDGALQLSRALAQAAETIRHCALCNTFTEQVICDTCQDGGRDTTTLCVVET 60
           MA  LL+ DR G L+L++AL  A E + HC  C T +E+ +C  C D  RD + LCVVE 
Sbjct: 28  MALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDSLLCVVEG 87

Query: 61  PSDQLMIEQTLTFKGLYFVLMGRLSPLDGVGPKDIHIEKLITRATDGVVAEVVLATNFTN 120
           P D   +EQT  ++G YFVL G LSPLDG+GP+ I I +L  R  DG  +EV+LATN T 
Sbjct: 88  PLDVFAVEQT-GYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTV 146

Query: 121 EGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRR 169
           EGEATAHYI++ L  RGL +SR+A GVP+GGELE VD GT+A A+  RR
Sbjct: 147 EGEATAHYIAQLLAGRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRR 195


>PM0206 [L] COG0353 Recombinational DNA repair protein (RecF pathway) Pmu
           Pasteurella multocida
          Length = 200

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 116/170 (68%), Gaps = 1/170 (0%)

Query: 1   MAYHLLQHDRDGALQLSRALAQAAETIRHCALCNTFTEQVICDTCQDGGRDTT-TLCVVE 59
           MAYHLLQ +R+G ++L+RAL +A   I HC+ C TFTE+ +C  C +  R  +  LCVVE
Sbjct: 28  MAYHLLQRNRNGGMELARALTEAMSKIGHCSHCRTFTEEEVCTICNNPRRQHSGLLCVVE 87

Query: 60  TPSDQLMIEQTLTFKGLYFVLMGRLSPLDGVGPKDIHIEKLITRATDGVVAEVVLATNFT 119
            PSD   IEQT  F G YFVLMG LSPLDG+GPK+I +  L  R  +    EV+LATN T
Sbjct: 88  QPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLHLLQKRLQEESFHEVILATNPT 147

Query: 120 NEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRR 169
            EG+ATA+YI+E    + +KV+R+A G+PVGGELE VD  T+  + L RR
Sbjct: 148 VEGDATANYIAELCMQQNIKVTRIAHGIPVGGELEMVDGTTLTHSFLGRR 197


>VC1056 [L] COG0353 Recombinational DNA repair protein (RecF pathway) Vch
           Vibrio cholerae
          Length = 200

 Score =  177 bits (450), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 114/169 (67%), Gaps = 1/169 (0%)

Query: 1   MAYHLLQHDRDGALQLSRALAQAAETIRHCALCNTFTEQVICDTCQDGGR-DTTTLCVVE 59
           MA+HLLQ DR G LQL+ AL+QA   I HC  C TFTEQ +C  C +  R +   LCVVE
Sbjct: 28  MAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKENGQLCVVE 87

Query: 60  TPSDQLMIEQTLTFKGLYFVLMGRLSPLDGVGPKDIHIEKLITRATDGVVAEVVLATNFT 119
           +P+D   +E T  F G YFVLMG LSPLDG+GP DI ++ L  R   G ++EV+LATN T
Sbjct: 88  SPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPT 147

Query: 120 NEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDR 168
            EGEATA YI+E  +   +  SR+A GVPVGGELE VD  T++ ++L R
Sbjct: 148 VEGEATAQYIAELCREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGR 196


>HI0443 [L] COG0353 Recombinational DNA repair protein (RecF pathway) Hin
           Haemophilus influenzae
          Length = 200

 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 115/170 (67%), Gaps = 1/170 (0%)

Query: 1   MAYHLLQHDRDGALQLSRALAQAAETIRHCALCNTFTEQVICDTCQDGGR-DTTTLCVVE 59
           MAYHLLQ +R G + L+RAL +A   I HC+ C  FTE+  C+ C +  R ++  LCVVE
Sbjct: 28  MAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNSGLLCVVE 87

Query: 60  TPSDQLMIEQTLTFKGLYFVLMGRLSPLDGVGPKDIHIEKLITRATDGVVAEVVLATNFT 119
            P+D   IEQT  F G YFVLMG LSPLDG+GP++I ++ L  R  +    EV+LATN T
Sbjct: 88  MPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPT 147

Query: 120 NEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAMLDRR 169
            EG+ATA+YI+E  +   +KVSR+A G+PVGGELE VD  T+  + L RR
Sbjct: 148 VEGDATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRR 197