BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0063.p         (205 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5438 [K] COG1737 Transcriptional regulators Pae Pseudomonas ae...   156   2e-38
NMB1389 [K] COG1737 Transcriptional regulators Nme Neisseria men...   144   2e-34
NMA1605 [K] COG1737 Transcriptional regulators NmA Neisseria men...   144   2e-34
yebK [K] COG1737 Transcriptional regulators Eco Escherichia coli...   122   5e-28
ZyebK [K] COG1737 Transcriptional regulators EcZ Escherichia col...   122   5e-28

>PA5438 [K] COG1737 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 293

 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 106/150 (70%)

Query: 47  RASKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKPGDAVVAISQRG 106
            A ++EFYG G SG VA+DAQHKFFR  +   AYSDPH+ +++A  LKP D  + ISQ G
Sbjct: 127 HAQRVEFYGFGASGAVASDAQHKFFRLLLSAAAYSDPHMQAMSAVTLKPSDVAICISQSG 186

Query: 107 GNAALLRSVQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLAHLVV 166
            +  LL +  L R+ GA +I L PS TPLA+LATV + ID+  + D YTP+++R+AHLVV
Sbjct: 187 RSKDLLITANLVREAGATLITLCPSQTPLADLATVNLAIDVHEDTDIYTPLTSRIAHLVV 246

Query: 167 IDILAVGLALRRGPEFRKKMQNAQKSLQKF 196
           ID+LA+G+A+ RGP+    +++ ++SL+  
Sbjct: 247 IDVLAMGVAMARGPDLVNHLKSVKRSLRSL 276


>NMB1389 [K] COG1737 Transcriptional regulators Nme Neisseria meningitidis
           MC58
          Length = 282

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 102/159 (64%)

Query: 43  GTSXRASKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKPGDAVVAI 102
            T   A ++EFYG G SGIVA DAQHKFFR G+ TVAY D H   +AAS+L   D +VAI
Sbjct: 122 ATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVAI 181

Query: 103 SQRGGNAALLRSVQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLA 162
           S  G +  LL +V +A++ GA +I L  + +PLA+LA  ++ +    N + YTP+ +RL 
Sbjct: 182 SNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLADCVLSVATQENAELYTPMVSRLL 241

Query: 163 HLVVIDILAVGLALRRGPEFRKKMQNAQKSLQKFDMQFD 201
            L VIDILA+GLALR G     ++Q ++KS+    + +D
Sbjct: 242 QLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKHIDYD 280


>NMA1605 [K] COG1737 Transcriptional regulators NmA Neisseria meningitidis
           Z2491
          Length = 282

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 102/159 (64%)

Query: 43  GTSXRASKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKPGDAVVAI 102
            T   A ++EFYG G SGIVA DAQHKFFR G+ TVAY D H   +AAS+L   D +VAI
Sbjct: 122 ATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVAI 181

Query: 103 SQRGGNAALLRSVQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLA 162
           S  G +  LL +V +A++ GA +I L  + +PLA+LA  ++ +    N + YTP+ +RL 
Sbjct: 182 SNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLADCVLSVATQENAELYTPMVSRLL 241

Query: 163 HLVVIDILAVGLALRRGPEFRKKMQNAQKSLQKFDMQFD 201
            L VIDILA+GLALR G     ++Q ++KS+    + +D
Sbjct: 242 QLAVIDILAIGLALRLGDAASLQLQKSKKSIHNKHIDYD 280


>yebK [K] COG1737 Transcriptional regulators Eco Escherichia coli K12
          Length = 289

 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 2/156 (1%)

Query: 47  RASKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKPGDAVVAISQRG 106
           +A KI F+G G+S  VA+DA +KFFR  VP V   D  +  ++      GD VV IS  G
Sbjct: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186

Query: 107 GNAALLRSVQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLAHLVV 166
               L+   QLAR+  A +I L  +GTPLA  AT+ + +D+  + D Y P+ +RLA L V
Sbjct: 187 RTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTV 246

Query: 167 IDILAVGLALRRGPEFRKKMQNAQKSLQ--KFDMQF 200
           ID+LA G  LRRG +FR  ++  +++L+  +FD Q 
Sbjct: 247 IDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282


>ZyebK [K] COG1737 Transcriptional regulators EcZ Escherichia coli O157:H7
           EDL933
          Length = 289

 Score =  122 bits (306), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 93/156 (59%), Gaps = 2/156 (1%)

Query: 47  RASKIEFYGQGTSGIVANDAQHKFFRSGVPTVAYSDPHIHSIAASLLKPGDAVVAISQRG 106
           +A KI F+G G+S  VA+DA +KFFR  VP V   D  +  ++      GD VV IS  G
Sbjct: 127 QAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTG 186

Query: 107 GNAALLRSVQLARKGGADIIVLGPSGTPLAELATVLVPIDLSFNIDPYTPISARLAHLVV 166
               L+   QLAR+  A +I L  +GTPLA  AT+ + +D+  + D Y P+ +RLA L V
Sbjct: 187 RTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTV 246

Query: 167 IDILAVGLALRRGPEFRKKMQNAQKSLQ--KFDMQF 200
           ID+LA G  LRRG +FR  ++  +++L+  +FD Q 
Sbjct: 247 IDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQL 282