BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0052.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0518 [C] COG4654 Cytochrome c551/c552 Pae Pseudomonas aeruginosa     99   3e-21
RSc3260 Non COG                                                        91   5e-19
RSc0629 Non COG                                                        77   7e-15

>PA0518 [C] COG4654 Cytochrome c551/c552 Pae Pseudomonas aeruginosa
          Length = 104

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 59/78 (75%), Gaps = 1/78 (1%)

Query: 16  LAKAKNCMACHSIQTKIVGPAFKDVAKKYAGQKDAEDKLTQKVLKGGSGVWGAIPMPANA 75
           L K K C+ACH+I TK+VGPA+KDVA K+AGQ  AE +L Q++  G  GVWG IPMP NA
Sbjct: 28  LFKNKGCVACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNA 87

Query: 76  QVSEAEARTLVKWVLTLK 93
            VS+ EA+TL KWVL+ K
Sbjct: 88  -VSDDEAQTLAKWVLSQK 104


>RSc3260 Non COG
          Length = 141

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 53/69 (76%)

Query: 22  CMACHSIQTKIVGPAFKDVAKKYAGQKDAEDKLTQKVLKGGSGVWGAIPMPANAQVSEAE 81
           C+ CH++  K+VGP+++DVA KY G   A+ KL QKV +GG GVWG IPMPAN ++S+A+
Sbjct: 67  CLGCHAVDRKLVGPSYQDVAAKYKGDAGAQAKLVQKVRQGGLGVWGQIPMPANPKISDAD 126

Query: 82  ARTLVKWVL 90
            +T++ WVL
Sbjct: 127 LKTVIDWVL 135


>RSc0629 Non COG
          Length = 104

 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 3/91 (3%)

Query: 1  VLAF-GVSAQASANADLAKAKNCMACHSIQTKIVGPAFKDVAKKYAGQKDAEDKLTQKVL 59
          +LA+ G SAQAS    LA    C+ACH    K VGP++ D+A KYA    + ++L   + 
Sbjct: 9  ILAWMGASAQASDA--LASRYACVACHQPAVKTVGPSWSDIAAKYADGSKSAEQLAAFIK 66

Query: 60 KGGSGVWGAIPMPANAQVSEAEARTLVKWVL 90
          +GGSG WG +PMPA   +S+A+A  L KWVL
Sbjct: 67 RGGSGNWGPVPMPAQPALSDADALALAKWVL 97