BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0048.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5529 [P] COG0475 Kef-type K+ transport systems, membrane compo...   137   5e-33

>PA5529 [P] COG0475 Kef-type K+ transport systems, membrane components Pae
           Pseudomonas aeruginosa
          Length = 585

 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 109/139 (78%), Gaps = 1/139 (0%)

Query: 2   DGIGGRLSTWIGDEQVRKAVIWGGALVLSLPFLIATYRKLQALAMLLAEVGVKPEFAGAY 61
           D +   +S W+  + + KA+IWGGAL++SL FLIA YRKL+AL+MLLAE+GVKPE AG +
Sbjct: 448 DTLSAWMSQWVAYDGLHKALIWGGALLVSLAFLIAAYRKLKALSMLLAELGVKPEKAGRH 507

Query: 62  TSGVRRVISEVIPVMSILGIMLLIFVLSASILPPLNLLAFVLLGAAGLLWLLWSKLVKLH 121
           T+ VRRVISE+IP++S+ G+M+L+  LS+SILPP  LL  V+L A  ++ +LW  L+++H
Sbjct: 508 TARVRRVISEIIPLLSLAGMMVLLAALSSSILPPGELLVVVVLVAGLVIAVLWRWLIRVH 567

Query: 122 SRLQIALFETLDEKPEDSH 140
           SR+QIAL ETLD++ + SH
Sbjct: 568 SRMQIALMETLDQE-KGSH 585