BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0026.p (401 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2391 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 306 5e-83 PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 180 4e-45 PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 179 8e-45 RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 177 4e-44 AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tu... 174 3e-43 >PA2391 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 474 Score = 306 bits (784), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 185/391 (47%), Positives = 265/391 (67%), Gaps = 13/391 (3%) Query: 1 MSRVRQAEANARIAGAPLLPD--ADFAGSANRALPLSG--GTPTTT-------ASGMLEI 49 ++RVRQA+A+A IAGAPLLP+ A S + L SG GT T+ S L Sbjct: 78 VARVRQAQASAVIAGAPLLPELNATLGASRQKLLRDSGYSGTDATSDNDAVDSFSAGLSA 137 Query: 50 NYEVDFWGKNRAGLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLRDRLEIARQNV 109 +YEVDFWG +A +A SL+A+ YDR TV LT+ SG+ +++LQVL+LR++ IAR N+ Sbjct: 138 SYEVDFWGGRQAAYRSALESLKASEYDRATVELTLLSGVANSYLQVLALREQQRIARLNL 197 Query: 110 GNAQRVLKLVEAQSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQTALAILLGRPP 169 NA+ VL+LVE + AG+A+ L++A+Q S +A+Q+ LP L QQ +A LA L+G P Sbjct: 198 DNAEHVLRLVETRHAAGSATALEVAQQSSLVASQRKQLPLLEQQAHEALITLATLIGEPV 257 Query: 170 QNFSVGEKGLATIQMPKIAPGLPSELLTRRPDIRRAEARLAEANANVAVARAALFPSIRL 229 Q V E+ +++ P+ GLPSELL+RRPDI AEA+LA A A+V VARAALFP + L Sbjct: 258 QALQVAERPFDSLRWPETGAGLPSELLSRRPDIANAEAQLAAAQADVQVARAALFPKLTL 317 Query: 230 TGSTGAQSNALLSLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQKQELVQVYRSAV 289 + S + +N F P NLGA+L APIF+ GRL + RD ++A+++EL++ YR A+ Sbjct: 318 SASLSSGANRAADTFRNPYY--NLGANLLAPIFNHGRLRAERDRSLARQEELLETYRKAI 375 Query: 290 VSALSEVEKSLGAIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDLMVVLDTQRILS 349 ++A ++ E+SL +I L+ + + QE++QA+ AF+LS+ RY++GAE L+ VL+TQR L Sbjct: 376 LTAFADTERSLNSIDGLDRQLHWQQQELEQAQRAFDLSDSRYQAGAETLLTVLETQRTLY 435 Query: 350 EAQNQLGQIKLQRLQATVSLYKALGGGWRDD 380 AQ+ Q++L RLQA+V LYKALGGGW+ D Sbjct: 436 AAQDAAVQLRLARLQASVGLYKALGGGWQSD 466 >PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 498 Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 116/352 (32%), Positives = 188/352 (53%), Gaps = 9/352 (2%) Query: 40 TTTASGMLEINYEVDFWGKNRAGLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLR 99 +T+ S L +++EVD WGK R L A +ASL A+ D V L+ S + +LQ+ + Sbjct: 139 STSYSTNLSVSWEVDLWGKLRRQLEANQASLHASAADLAAVRLSQQSQLAQNYLQLRVMD 198 Query: 100 DRLEIARQNVGNAQRVLKLVEAQSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQT 159 +++ + V +R LK+ E + RAG + D+A+ R+ L + QA DL Q + Sbjct: 199 EQIRLLNDTVTAYERSLKVAENKYRAGIVTRADVAQARTQLKSTQAQAIDLKYQRAQLEH 258 Query: 160 ALAILLGRPPQNFSVGEKGLATI-QMPKIAPGLPSELLTRRPDIRRAEARLAEANANVAV 218 A+A+L+G PP F++ +A++ ++P + +PS+LL RRPDI AE ++ ANA + V Sbjct: 259 AIAVLVGLPPAQFNL--PPVASVPKLPDLPAVVPSQLLERRPDIASAERKVISANAQIGV 316 Query: 219 ARAALFPSIRLTGSTGAQSNALLSLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQK 278 A+AA FP + L+ + G +S +L + PN ++G +FD G + S+ D A A Sbjct: 317 AKAAYFPDLTLSAAGGYRSGSLSNWISTPNRFWSIGPQFAMTLFDGGLIGSQVDQAEATY 376 Query: 279 QELVQVYRSAVVSALSEVEKSLGAIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDL 338 + V YR V+ EVE L + L+E ++ + ++ AR A L+E +Y++G D Sbjct: 377 DQTVATYRQTVLDGFREVEDYLVQLSVLDEESGVQREALESAREALRLAENQYKAGTVDY 436 Query: 339 MVVLDTQRILSEAQNQLGQIKLQRLQATVSLYKALGGGW------RDDVRYG 384 V+ Q + + + RL A+V L A+GGGW R D R G Sbjct: 437 TDVVTNQATALSNERTVLTLLGSRLTASVQLIAAMGGGWDSADIERTDERLG 488 >PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 479 Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 206/389 (52%), Gaps = 14/389 (3%) Query: 2 SRVRQAEANARIAGAPLLPDADFAGSANRALPLSGG--TPTTTAS--------GMLEINY 51 +R++Q+ A R G LP D +G+ R S G P+ A + ++ Sbjct: 83 ARLQQSRAIRRSLGGDALPSVDASGNYQRQRTTSAGLFDPSGKAGKGNYNHALAGFDASW 142 Query: 52 EVDFWGKNRAGLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLRDRLEIARQNVGN 111 E+DFWG+ R L AA+A++ A+ + V ++V + ++Q+ ++R I R N+ Sbjct: 143 ELDFWGRVRRELEAADATVEASENELRDVQVSVLAEAARDYIQLRGEQNRAAIIRDNLET 202 Query: 112 AQRVLKLVEAQSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQTALAILLGRPPQN 171 A+R L+L + G A+ L++A+ + +A+ +A LP++ + + AL L+G P + Sbjct: 203 ARRSLELTRTRLANGVATDLEVAQALAQVASMEARLPEVEKNQAHLVNALGYLVGASPGS 262 Query: 172 FSVGEKGLA-TIQMP--KIAPGLPSELLTRRPDIRRAEARLAEANANVAVARAALFPSIR 228 + E G A I P + GLPSEL RRPDIRRAEARL A A++ VA+A +P I Sbjct: 263 L-LAELGPARAIPRPPGSVPVGLPSELAQRRPDIRRAEARLHAATASIGVAKADFYPRIT 321 Query: 229 LTGSTGAQSNALLSLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQKQELVQVYRSA 288 L G+ G +S L SL D + +G + + PIF+ GRL R +L AQ+QE Y+ Sbjct: 322 LNGNFGFESLQLSSLGDWDHRQFAIGPAFSLPIFEGGRLRGRLELREAQQQEAAIDYQRT 381 Query: 289 VVSALSEVEKSLGAIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDLMVVLDTQRIL 348 V+ A EV+ ++ + R + V Q R A + + +YR+GA D + VLD+QR L Sbjct: 382 VLRAWQEVDDAMHDYAANQRRQERLGEAVAQNRRALQSAREQYRAGAVDFLSVLDSQRQL 441 Query: 349 SEAQNQLGQIKLQRLQATVSLYKALGGGW 377 + Q Q V+LYKALGGGW Sbjct: 442 LDNQEQQVASDEAVSLTLVNLYKALGGGW 470 >RSp1200 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 508 Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 187/354 (52%), Gaps = 6/354 (1%) Query: 34 LSGGTP--TTTASGMLEINYEVDFWGKNRAGLAAAEASLRANMYDRETVALTVTSGIVST 91 LS G+P T T S L+ ++E+D WG+ R + + +AS A+ D + L+ + + Sbjct: 137 LSTGSPSITNTQSLTLDASWELDLWGRIRRTVESNKASAEASAGDLASALLSAQATLAQD 196 Query: 92 FLQVLSLRDRLEIARQNVGNAQRVLKLVEAQSRAGAASPLDLARQRSALANQQAALPDLM 151 + Q+ + + R+ V + +R L+L + Q G A D+ ++ L QA L D Sbjct: 197 YFQLRVTDTQKAVLRRTVADYERFLQLTQNQYAVGVAQRSDVLTAQTQLKQTQALLLDAE 256 Query: 152 QQERDAQTALAILLGRPPQNFSVGEKGLATIQ----MPKIAPGLPSELLTRRPDIRRAEA 207 + A+A+L+G+ P FS+ AT Q +P I +PS +L RRPDI AE Sbjct: 257 VTRAQLEHAIAVLIGKSPSAFSLAPVSAATAQELPPLPDIPLEIPSTVLERRPDIAAAER 316 Query: 208 RLAEANANVAVARAALFPSIRLTGSTGAQSNALLSLFDGPNLLANLGASLTAPIFDAGRL 267 R+A+ANAN+ VA+AA FP++ L S G +N L L P+ + ++G +L A +F+ G L Sbjct: 317 RVAQANANIGVAKAAYFPTLTLGASAGLSANTLSRLATLPSRIWSIGPTLAATLFEGGAL 376 Query: 268 NSRRDLAVAQKQELVQVYRSAVVSALSEVEKSLGAIRTLEERYRLKNQEVDQARFAFELS 327 N+ + A A V YR V+ A +VE +L A+R + + ++N V A+ A +L Sbjct: 377 NAAVNKAGAAYDAAVGTYRQTVLGAFQDVEDNLAALRWQAQEFDVQNDAVQSAQEAAQLD 436 Query: 328 EIRYRSGAEDLMVVLDTQRILSEAQNQLGQIKLQRLQATVSLYKALGGGWRDDV 381 RYR+G + V+ Q A+ L ++ +R A V L KALGGGW +V Sbjct: 437 LNRYRAGTISFLEVITAQATAYTAERTLLTLQGKRYSAAVLLVKALGGGWHGEV 490 >AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 513 Score = 174 bits (441), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 205/400 (51%), Gaps = 13/400 (3%) Query: 1 MSRVRQAEANARIAGAPLLPD--ADF----AGSANRALPLSGGTPTTTASGMLEINYEVD 54 + R+ QA++N +AGA LP + F GS +LP + T T S + + +D Sbjct: 107 IERINQAQSNITVAGAGSLPSLTSTFRHQTQGSGG-SLPSTNDNVTNTTSNAFNVGWLLD 165 Query: 55 FWGKNRAGLAAAEASLRANMYDRETVALTVTSGIVSTFLQVLSLRDRLEIARQNVGNAQR 114 +G+ R +A ASL A LT+ S + S ++ V ++RL IARQN+G+ + Sbjct: 166 LFGQYRRAQESAGASLDAAYATANVQRLTLISAVTSAYIDVRYYQERLAIARQNLGSRRE 225 Query: 115 VLKLVEAQSRAGAASPLDLARQRSALANQQAALPDLMQQERDAQTALAILLGRPPQNFSV 174 L L + Q AGAAS LD+ + + + A +P L R A +A LLG P + + Sbjct: 226 TLSLTKLQLDAGAASRLDVVQSEGLVNSTLAQMPALETNFRRAAHRIATLLGMPADSLVM 285 Query: 175 GEKGLATIQMPKIAP--GLPSELLTRRPDIRRAEARLAEANANVAVARAALFPSIRLTGS 232 + A + + P G+P++L+ RPDIR AE +LA A A++ VA A L+PSI L+GS Sbjct: 286 ELQRGARQPVARTIPRTGIPADLIRNRPDIRVAERQLAAAVADIGVAEAQLYPSITLSGS 345 Query: 233 TGAQSNALLSLFDGPNLLANLGASLTAPIFDAGRLNSRRDLAVAQKQELVQVYRSAVVSA 292 + + G + G S+T PI D GRL + D+ + +E +++ V++A Sbjct: 346 ITPSFTKISNGASGTSNGWGFGPSITLPILDGGRLRAGVDIQKSVAREQYLAWKATVLNA 405 Query: 293 LSEVEKSLGAIRTLEERYRLKNQEVDQARFAFELSEIRYRSGAEDLMVVLDTQRILSEAQ 352 + EVE +L A+ ++ + V + A L+ YR GA L+ VLD QR +S+AQ Sbjct: 406 VEEVENALTALNRDQQTVSAYRRTVSSYQEALSLATASYRDGASSLLDVLDAQRNVSDAQ 465 Query: 353 NQLGQIKLQRLQATVSLYKALGGGWRDDVRYGNPGTDSGG 392 +QL Q Q V+L ALGGG+ G T GG Sbjct: 466 SQLATAIQQAAQDYVALSVALGGGY----AVGQTATSKGG 501