BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0022.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2265 [E] COG2303 Choline dehydrogenase and related flavoprotei...   182   1e-46
Cj0415 [E] COG2303 Choline dehydrogenase and related flavoprotei...    91   5e-19

>PA2265 [E] COG2303 Choline dehydrogenase and related flavoproteins Pae
           Pseudomonas aeruginosa
          Length = 591

 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 100/125 (80%)

Query: 1   MTFDWKENEIRMTQYVTDRVVDVAKAMKPKLMHAAATKSGEHYDVRPYQTTHTTGGAICG 60
           MTFDWK+NEIRM++YVT+ +  +A+AM PK +  +    G+H++ R YQTTH  GGAI G
Sbjct: 467 MTFDWKDNEIRMSRYVTEHMRKIAEAMNPKAISVSVKNFGDHFNTRVYQTTHLLGGAIMG 526

Query: 61  DRPGNSVINKYLQSWDVHNLFVMGASAFPQNWAYNPTGMVGALAYWSAAAIRERYLKNPG 120
             P  SV+N+YLQSWDVHN+FVMGASAFPQ   YNPTG+V ALAYWSA AIRE+YLKNPG
Sbjct: 527 SDPKTSVLNRYLQSWDVHNVFVMGASAFPQGTGYNPTGLVAALAYWSAKAIREQYLKNPG 586

Query: 121 PLVQA 125
           PLVQA
Sbjct: 587 PLVQA 591


>Cj0415 [E] COG2303 Choline dehydrogenase and related flavoproteins Cje
           Campylobacter jejuni
          Length = 573

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 7/114 (6%)

Query: 1   MTFDWKENEIRMTQYVTDRVVDVAKAMKPKLMHAAATKSGEH---YDVRPYQTTHTTGGA 57
           +T+++ + +  + +++TD+  +VAK M+       + K G +   Y V PYQ+TH TGG 
Sbjct: 453 LTYNFTDQDRALHKFITDKTAEVAKRMQ----GVKSIKKGAYLKDYSVVPYQSTHNTGGT 508

Query: 58  ICGDRPGNSVINKYLQSWDVHNLFVMGASAFPQNWAYNPTGMVGALAYWSAAAI 111
             G     SV+N YLQ WD  NLFV+GA  F  N  YNPT  VGALAY  A  I
Sbjct: 509 TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGI 562