BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0013.p (291 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport... 185 1e-46 BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transpo... 180 4e-45 SMc03118 [E] COG0559 Branched-chain amino acid ABC-type transpor... 162 6e-40 RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport... 160 3e-39 RSc1751 [E] COG0559 Branched-chain amino acid ABC-type transport... 158 2e-38 >AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 295 Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/272 (41%), Positives = 158/272 (58%), Gaps = 2/272 (0%) Query: 17 GGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLG--FTGALIISPLLVAL 74 G +Y L++LGL++IF L V+N AHGA Y +GA++A +Y G F ALI++PL+VAL Sbjct: 23 GSFYALLSLGLAVIFGLLRVINFAHGAQYMLGAFVAFLGLQYFGINFWMALIVTPLVVAL 82 Query: 75 IGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASIPPALKGQIMVG 134 G + ERF+L R Y DP+ GLL TFGLA+V E R +GA+ P S+P L G +G Sbjct: 83 FGAIVERFMLSRLYDLDPLYGLLFTFGLALVVEGTFRWLYGAAGQPYSVPRELAGGTNLG 142 Query: 135 DFMYSKYRLLMLAAVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVLGIKLHPYMTAIV 194 YR ++ +VA W L+ KT G +RA + P +V GI + +T Sbjct: 143 FMFLPNYRAFVVVISLVACIATWALIEKTRLGSYLRAATENPTLVQAFGINVPVLLTLTY 202 Query: 195 MLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVVLAALLVGVVRGI 254 LG GLA GVL API V P MG ++ F VVV+GG+GS G ++ ++G+ G+ Sbjct: 203 ALGAGLAGFTGVLAAPIYQVSPLMGTNLIIVVFAVVVVGGMGSIMGAIVTGYMLGIAEGL 262 Query: 255 TIQFYAPAGEASMYLLMLLVLIFRPRGLLGER 286 T FY A ++++M VL+ RP GL G+ Sbjct: 263 TKVFYPEASNIVIFVIMAFVLLIRPAGLFGKD 294 >BMEII0341 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 295 Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 110/283 (38%), Positives = 170/283 (60%), Gaps = 2/283 (0%) Query: 6 LLEQILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLGFT--G 63 LL Q+L GL+ G +Y +++LGL++IF L ++N AHGA Y +GA++ + +LG + Sbjct: 12 LLGQLLVGLINGSFYAMLSLGLAIIFGLLRIINFAHGAQYMLGAFVGYLLLSWLGISYWP 71 Query: 64 ALIISPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASI 123 AL+++PL+V L G + ER L R Y+ DP+ GLL TFGLA+V E R ++GA+ P ++ Sbjct: 72 ALVLAPLIVGLGGAIIERVALSRLYNLDPLYGLLFTFGLALVIEGTFRYYYGAAGQPYAV 131 Query: 124 PPALKGQIMVGDFMYSKYRLLMLAAVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVLG 183 PP+L G +G YR ++ A + W+L+ KT G +RA + P +V G Sbjct: 132 PPSLAGGRNLGFMFLPNYRAWVVVASLFVCLGTWLLIEKTKLGAYLRAATENPTLVKAFG 191 Query: 184 IKLHPYMTAIVMLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVVL 243 I + +T LG LA LAG++ API V P MG+ I+ F VVV+GG+GS G ++ Sbjct: 192 INVPLLLTFTYALGSALAGLAGIMAAPIYQVSPLMGSNIIIVVFAVVVVGGMGSILGAII 251 Query: 244 AALLVGVVRGITIQFYAPAGEASMYLLMLLVLIFRPRGLLGER 286 ++G+ G+T FY A ++++M +VL+ RP GL G+ Sbjct: 252 TGYVLGIAEGLTKVFYPEASSIVVFVIMAIVLLVRPAGLFGKE 294 >SMc03118 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Sme Sinorhizobium meliloti Length = 295 Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 118/282 (41%), Positives = 168/282 (59%), Gaps = 2/282 (0%) Query: 7 LEQILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLG--FTGA 64 L Q+L GL+ G +Y L++LGL++IF L V+N AHGA Y +GA++A + YLG + A Sbjct: 13 LGQLLIGLINGSFYALLSLGLAIIFGLLRVINFAHGAQYMLGAFMAWLLLSYLGIGYWPA 72 Query: 65 LIISPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASIP 124 LI++PLLV LIG + ER +LRR Y+ DP+ GLL TFGLA+ E R +GAS P + P Sbjct: 73 LILAPLLVGLIGAVIERTMLRRLYTLDPLYGLLFTFGLALTIEGTFRYLYGASGQPYATP 132 Query: 125 PALKGQIMVGDFMYSKYRLLMLAAVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVLGI 184 L G +G YR ++ +V W+++ KT G +RA + P +V GI Sbjct: 133 ALLMGGANLGFMFLPIYRGWVIVFSLVICLGTWLMIEKTKLGSYLRAATENPVLVQSFGI 192 Query: 185 KLHPYMTAIVMLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVVLA 244 + +T LG LAA+AGVL API V P MG+ I+ F VVV+GG+GS G ++ Sbjct: 193 NVPFLLTLTYGLGAALAAIAGVLAAPIYQVSPLMGSNIIIVVFAVVVVGGMGSIMGAIVT 252 Query: 245 ALLVGVVRGITIQFYAPAGEASMYLLMLLVLIFRPRGLLGER 286 L+G+ G+T FY A ++++M +VL+ RP GL G Sbjct: 253 GYLLGIAEGLTKVFYPEASNIVIFVIMAIVLLLRPAGLFGRD 294 >RSc3341 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 313 Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/283 (38%), Positives = 160/283 (56%), Gaps = 2/283 (0%) Query: 6 LLEQILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLG--FTG 63 +L Q+L GL+ G +Y +++LGL++IF L V+N AHGA + +GA L YL + Sbjct: 30 MLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGALFMLGAVLTWMGLSYLDLPYWV 89 Query: 64 ALIISPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASI 123 L+ +PL V ++G++ ER +LR Y D + GLLLT G+ +V E V R +G S LP S Sbjct: 90 MLVAAPLAVGVVGVVIERTMLRFIYKLDHLYGLLLTLGVTLVIEGVFRAVYGVSGLPYST 149 Query: 124 PPALKGQIMVGDFMYSKYRLLMLAAVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVLG 183 P L G +G + YR ++ A + W ++ KT G +RAG + P +V G Sbjct: 150 PELLSGATDLGFMVLPNYRAWVVVASLTVCFATWFMIEKTKLGAYLRAGTENPKLVEAFG 209 Query: 184 IKLHPYMTAIVMLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVVL 243 + + +T GV LAA AGVL AP+ + P MG ++ F VVVIGG+GS G ++ Sbjct: 210 VNVPLMVTLTYGFGVALAAFAGVLAAPVIQISPLMGQNMIITVFAVVVIGGMGSILGSIV 269 Query: 244 AALLVGVVRGITIQFYAPAGEASMYLLMLLVLIFRPRGLLGER 286 L +GV+ G+T Y A ++++M LVL+ RP GL G Sbjct: 270 TGLGLGVIEGLTKVVYPQASSTVVFVIMALVLLVRPAGLFGRE 312 >RSc1751 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 315 Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 166/311 (53%), Gaps = 29/311 (9%) Query: 5 FLLEQILNGLLVGGYYLLIALGLSLIFSLGGVVNLAHGAFYAIGAYLAVEITKYLGFTGA 64 FL+ +LNG+ G +++ GL+LIFS+ GV+N AH +FY +GAY A ++ YLGF A Sbjct: 3 FLVINLLNGISYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMLGAYFAYVVSGYLGFWAA 62 Query: 65 LIISPLLVALIGILFERFLLRRFYSADPILGLLLTFGLAMVAEQVIRIFWGASPLPASIP 124 LI++PLLV +G L ERF LR + + LL TFGLA + E+ +++ WG +P +P Sbjct: 63 LIVAPLLVGALGALVERFGLRTVHRYGHVAELLFTFGLAYLIEEGVKLVWGLPAVPYRVP 122 Query: 125 PALKGQIMV-GDFMYSKYRLLMLAAVIVALALIWILLNKTSFGRVVRAGVQKPDMVAVLG 183 AL G + + KYR M+ ++ L I++LL +T G V++A + PDMV LG Sbjct: 123 EALDGPLFTLFTSSFPKYRAFMMLVSLLMLVGIFLLLTRTRIGLVIQAALTHPDMVEALG 182 Query: 184 IKLHPYMTAIVMLGVGLAALAGVLFAPISGVHPAMGAEIMTAAFVVVVIGGLGSFWGVVL 243 + + G LA LAGV+ P+M A + + FVV V+GG+GS G + Sbjct: 183 HNVPRVFMLVFGGGCALAGLAGVIGGNAFVTEPSMAAAVGSIVFVVAVVGGMGSLVGAFI 242 Query: 244 AALLVGVVRGITIQF----------------------------YAPAGEASMYLLMLLVL 275 A+LL+G ++ + A YLL++L+L Sbjct: 243 ASLLIGCIQTFAVTLDVSVTSLLGKLGVALNPDVPLISVWNLTIAQVAPVLPYLLLVLML 302 Query: 276 IFRPRGLLGER 286 IFRPRGL+G R Sbjct: 303 IFRPRGLMGTR 313