BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0004.p         (111 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3447 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...    75   4e-14
mll1757 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    75   5e-14
BS_ssuB [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...    73   2e-13
TM0483 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...    73   2e-13
MJ0412 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...    72   3e-13

>PA3447 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Pae Pseudomonas aeruginosa
          Length = 249

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 5/91 (5%)

Query: 1   LLLDEPFGALDALTRMTLQDALRTLIRSEVQGKAPTVLLVTHDVDEALFLADRILVFSAR 60
           LLLDEPF A+DA TRM LQD    L++  VQ    +VLLVTHD+DEA +LADR+L+   R
Sbjct: 154 LLLDEPFSAVDAFTRMRLQD----LLQDVVQNYEISVLLVTHDLDEAFYLADRVLLMGGR 209

Query: 61  PATVLKEFNL-VHHEKTHDLSEFSAIRREIL 90
           P  + +EF++ +   +     E + +R E L
Sbjct: 210 PGHIRREFHVPLARPRDRRAVELAYLRGEAL 240


>mll1757 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Mlo Mesorhizobium loti
          Length = 257

 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 48/70 (68%), Gaps = 4/70 (5%)

Query: 1   LLLDEPFGALDALTRMTLQDALRTLIRSEVQGKAPTVLLVTHDVDEALFLADRILVFSAR 60
           LLLDEPFGALDALTR  +Q  L  + R        T LL+THDV EA++L+DRI V SAR
Sbjct: 153 LLLDEPFGALDALTRAAMQRWLEQMWRHHRW----TALLITHDVREAVYLSDRIYVLSAR 208

Query: 61  PATVLKEFNL 70
           PA VL+E  +
Sbjct: 209 PARVLREIRV 218


>BS_ssuB [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Bsu Bacillus subtilis
          Length = 274

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 64/112 (57%), Gaps = 9/112 (8%)

Query: 1   LLLDEPFGALDALTRMTLQDALRTLIRSEVQGKAPTVLLVTHDVDEALFLADRILVFSAR 60
           LLLDEPFGALDA TR  LQD L  + R     K  T++LVTHD+DE+++L + + +  A+
Sbjct: 171 LLLDEPFGALDAFTRKHLQDVLLDIWRK----KKTTMILVTHDIDESVYLGNELAILKAK 226

Query: 61  PATVLKEFNL-VHHEKTHDLSEFSAIRREILCLLGIHAEQDEFAKTIEGVGI 111
           P  + K   + + + +     +F AIR+ +L       E+ E  +  EG GI
Sbjct: 227 PGKIHKLMPIHLAYPRNRTTPDFQAIRQRVLS----EFEKTEDLEYAEGSGI 274


>TM0483 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Tma Thermotoga maritima
          Length = 235

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 8/94 (8%)

Query: 1   LLLDEPFGALDALTRMTLQDALRTLIRSEVQGKAPTVLLVTHDVDEALFLADRILVFSAR 60
           L+LDEPF ++DA TR  LQ  L  +    V     TV+L+THDV+EA+FL+DRIL+ S R
Sbjct: 139 LVLDEPFSSVDAYTRKKLQIWLSEI----VHRMKSTVVLITHDVEEAVFLSDRILILSDR 194

Query: 61  PATVLKE----FNLVHHEKTHDLSEFSAIRREIL 90
           PA +LKE    F+     KT     FS I  E+L
Sbjct: 195 PARILKEIRVPFSKPRTIKTFSDPRFSEIEEEVL 228


>MJ0412 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Mja Methanococcus jannaschii
          Length = 267

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 12/109 (11%)

Query: 1   LLLDEPFGALDALTRMTLQDALRTLIRSEVQGKAPTVLLVTHDVDEALFLADRILVFSAR 60
           +L+DEPF ALDA TR  LQ+ L  + + E +    TV  VTH VDEA++L+DR++V +AR
Sbjct: 169 VLMDEPFAALDAQTRNILQNELLKIWQKEKK----TVFFVTHSVDEAVYLSDRVVVLTAR 224

Query: 61  PATVLKEFNLVHHEKTHDLS--EFSAIRREILCLLGIHAEQDEFAKTIE 107
           P  + KE   +  E+  D +  EF   R++IL +L     +DE  K+++
Sbjct: 225 PGRI-KEIVKIDLERPRDRTSIEFLEYRKKILNIL-----KDEVLKSLK 267