BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0002.p         (235 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2433 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Rso...   136   4e-32
MA0063 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...   119   4e-27
BMEII0108 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate tra...   111   1e-24
MK0603 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transp...   109   6e-24
PAE1066 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate trans...   108   8e-24

>RSc2433 [MG] COG0451 Nucleoside-diphosphate-sugar epimerases Rso Ralstonia
           solanacearum
          Length = 341

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/117 (58%), Positives = 84/117 (71%)

Query: 115 AKVNLGTPALSAEDDVYTNHIHADDLAAIAVRAIDQARPLRVYHAVDDSDMKMGDYFDAV 174
           A++  GTPAL  EDDV+TNHIHADDLA   + A+ + RP RV H  D ++++MGDYFDAV
Sbjct: 221 ARLQRGTPALRREDDVFTNHIHADDLARALIAALFRGRPQRVVHVSDATELRMGDYFDAV 280

Query: 175 ARTFNLPAPPRLPRAELQQQVTPMMLSFMSESRRLRNDRLRNELGVRLRYPDVATLL 231
           A    LP PPR+ RAE  +Q+ P +LSFMSESRRLR+ RL  EL + LRYP VA  L
Sbjct: 281 AAARGLPRPPRIARAEAVRQLEPALLSFMSESRRLRSVRLARELRLALRYPTVADFL 337


>MA0063 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Mac Methanosarcina acetivorans
           str.C2A
          Length = 268

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 6/125 (4%)

Query: 2   KLSFKNIQKSFS------GLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPS 55
           ++S KN+ + FS      G   + + S D++ GE + L+GPSGCGK+TLL IAAGLET +
Sbjct: 17  RVSVKNVSRVFSKKEDESGTEALHNISFDVQDGEFICLLGPSGCGKTTLLRIAAGLETLT 76

Query: 56  SGSILADGQPVTGPHPERTLMFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLA 115
           SG I  +G P+TGP P+R ++FQ+ +L+PW T+  N+   LE Q + K  A  Q   +L 
Sbjct: 77  SGEITLNGVPITGPDPKRGMVFQQYSLFPWRTVIDNITFGLEMQGIKKSEARKQVEKYLE 136

Query: 116 KVNLG 120
            V LG
Sbjct: 137 LVGLG 141


>BMEII0108 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Bme Brucella melitensis
          Length = 242

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 64/95 (67%)

Query: 2   KLSFKNIQKSFSGLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSILA 61
           K+SF N+   + G   +D  + DI  GE V +VGPSGCGKST ++IA GL  PS G IL 
Sbjct: 9   KISFNNVVMRYGGFLALDRLNLDIADGEFVTVVGPSGCGKSTAMNIADGLLQPSGGGILV 68

Query: 62  DGQPVTGPHPERTLMFQENALYPWLTLEQNVALAL 96
             +PVTGP PER ++FQ+ AL+PWLT+ QNV   L
Sbjct: 69  GDKPVTGPGPERGVIFQQYALFPWLTVRQNVEFGL 103


>MK0603 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Mka Methanopyrus kandleri AV19
          Length = 246

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 4/135 (2%)

Query: 3   LSFKNIQKSFSGLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSILAD 62
           L  +++ KS+  L V+D  + ++ +GE  A+VGPSGCGK+TLL I AGLE   +G +L D
Sbjct: 5   LKVEDLHKSYDDLKVLDGITFEVSEGEFFAIVGPSGCGKTTLLKIIAGLEDYDAGRVLVD 64

Query: 63  GQPVTGPHPERTLMFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKVNLGTP 122
           G+ V  P P+R L+FQE A++PW T+ +NV  A   Q  D + A   AR  L  V    P
Sbjct: 65  GEEVREPGPDRALVFQEYAIFPWKTVLENVMFAPLMQGKDPEEAERIARECLKVV----P 120

Query: 123 ALSAEDDVYTNHIHA 137
            L   +D Y   +  
Sbjct: 121 GLEGFEDAYPKQLSG 135


>PAE1066 [P] COG1116 ABC-type nitrate/sulfonate/bicarbonate transport
           system, ATPase component Pya Pyrobaculum aerophilum
          Length = 254

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 70/117 (59%)

Query: 3   LSFKNIQKSFSGLHVIDDFSRDIEQGELVALVGPSGCGKSTLLHIAAGLETPSSGSILAD 62
           +    I+K +  + V +D S DIE GE VAL+GPSGCGKSTLL I AGLE P SG +   
Sbjct: 14  IEVNKIKKRYGKVEVFNDLSIDIETGEFVALLGPSGCGKSTLLRIIAGLERPDSGEVRFR 73

Query: 63  GQPVTGPHPERTLMFQENALYPWLTLEQNVALALEFQKVDKKSAAAQARAWLAKVNL 119
           G+PV GP  E  LMFQ   + PW T + NVAL L  + +  + A   A  +LA V L
Sbjct: 74  GEPVRGPRREIALMFQSPTILPWKTAQDNVALPLVARGMGWREAREAAARYLALVGL 130