BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0062.p         (165 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1616 [K] COG1609 Transcriptional regulators Rso Ralstonia sol...   187   7e-48
STM3696 [K] COG1609 Transcriptional regulators Sty Salmonella ty...   155   5e-38
AGl391 [K] COG1609 Transcriptional regulators Atu Agrobacterium ...   120   1e-27
PA2320 [K] COG1609 Transcriptional regulators Pae Pseudomonas ae...   111   7e-25
mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium...   107   1e-23

>RSp1616 [K] COG1609 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 350

 Score =  187 bits (476), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 98/163 (60%), Positives = 127/163 (77%), Gaps = 2/163 (1%)

Query: 2   TAPAPVVRKGRKGAG-LTLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGY 60
           TAPAP  R+ RK  G +TL D+ARL GV  +T SRALNTP+ VS   L +VR+AV +TGY
Sbjct: 12  TAPAPA-RRARKSTGRITLSDLARLVGVTKVTVSRALNTPELVSADTLGRVREAVRQTGY 70

Query: 61  VPNLLAGGLASKKSRLVAAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSRED 120
            P+L+AG LAS +SRL+ A++PTI G +F ET+ +LT  LA AGYQL++GQSGY+ SRED
Sbjct: 71  TPDLVAGSLASNRSRLIVALIPTIAGSVFQETIAALTTELAAAGYQLLIGQSGYDESRED 130

Query: 121 ALLEAIIGRRPDGVVLTGIMRSPESRKRLLASGIPVVETWDLT 163
           ALL+AI+GRRP G+VLTG+  S   R++L A+G+PVVETWD+T
Sbjct: 131 ALLDAIVGRRPAGIVLTGVAHSASVRQKLQAAGVPVVETWDIT 173


>STM3696 [K] COG1609 Transcriptional regulators Sty Salmonella typhimurium
           LT2
          Length = 334

 Score =  155 bits (391), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/146 (52%), Positives = 104/146 (71%)

Query: 18  TLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGYVPNLLAGGLASKKSRLV 77
           TL DVAR AG++P+T SRALN+P  V    ++KV  AV  TGY+PN LAGGLAS++S+L+
Sbjct: 11  TLEDVARSAGLSPMTVSRALNSPQLVRPKTVEKVMQAVRVTGYIPNALAGGLASRRSKLI 70

Query: 78  AAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSREDALLEAIIGRRPDGVVLT 137
           A VVP I   +F++T+QSL++ LA  GY ++L  +GY    E  L+  ++ RRPDGVVLT
Sbjct: 71  AVVVPQINNNMFVDTIQSLSDELARRGYHILLCVAGYTEQTEAELVATLLSRRPDGVVLT 130

Query: 138 GIMRSPESRKRLLASGIPVVETWDLT 163
           GI  + E +K +L + IPVVE WDLT
Sbjct: 131 GIHHTIELKKVILNAAIPVVEIWDLT 156


>AGl391 [K] COG1609 Transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 352

 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 95/145 (65%)

Query: 18  TLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGYVPNLLAGGLASKKSRLV 77
           T+ DV++LAGV+ +T SR L  P  VSE   +KV  A+E+ GYVP+ +AG L+S+++  +
Sbjct: 12  TMSDVSKLAGVSKMTVSRVLADPALVSEDTRQKVMKAIEKLGYVPDRIAGSLSSRRTNFI 71

Query: 78  AAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSREDALLEAIIGRRPDGVVLT 137
            A++PT+    F ++ Q L  AL  A YQL++G + Y+   E+ ++  ++ RRPD +V+ 
Sbjct: 72  TAILPTLTNSNFADSAQGLANALRAADYQLLIGYTMYDLLEEERVIRTMMERRPDAIVVA 131

Query: 138 GIMRSPESRKRLLASGIPVVETWDL 162
           G + +  + + L+ +GIP+VE WD+
Sbjct: 132 GTVHTKMASEVLMRAGIPIVEIWDV 156


>PA2320 [K] COG1609 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 343

 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/147 (40%), Positives = 92/147 (62%)

Query: 18  TLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGYVPNLLAGGLASKKSRLV 77
           TL +VAR AGV+PITASRAL    +V+E + +KVRDA    GYV N  A  LAS +S  V
Sbjct: 17  TLNEVARRAGVSPITASRALRGVASVAEELAQKVRDAARELGYVANPAARALASAQSHSV 76

Query: 78  AAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSREDALLEAIIGRRPDGVVLT 137
           A +VP++   +F+ET++++   L   G ++++G   Y  + E+ L+   +  +P G++LT
Sbjct: 77  AVLVPSLANLLFIETLEAIHAVLRPQGLEVLIGNFHYSRNEEEDLIRNYLAYQPRGLLLT 136

Query: 138 GIMRSPESRKRLLASGIPVVETWDLTA 164
           G  R+  +R+ + ASGIP V   DL +
Sbjct: 137 GFERTESARRMIEASGIPCVYMMDLDS 163


>mll1683 [K] COG1609 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 344

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 96/153 (62%), Gaps = 1/153 (0%)

Query: 10  KGRKGAGL-TLRDVARLAGVAPITASRALNTPDAVSETVLKKVRDAVERTGYVPNLLAGG 68
           + R+G G  T+ DVAR AGV  IT SRAL  P+ VSE + ++++ AV+  GYVP+  A  
Sbjct: 7   RSRRGGGRPTIADVARKAGVGAITVSRALREPERVSEELRRQIQAAVDELGYVPDPNARA 66

Query: 69  LASKKSRLVAAVVPTIVGPIFLETVQSLTEALADAGYQLMLGQSGYENSREDALLEAIIG 128
           LAS ++ +   +VP++   +F E V+ + ++L+D+ +++ LG + Y    E+ LL+    
Sbjct: 67  LASARAEVFGVLVPSLTNNVFAEVVRGIYDSLSDSPFRIQLGNTHYSGLEEERLLQLFGS 126

Query: 129 RRPDGVVLTGIMRSPESRKRLLASGIPVVETWD 161
           +RP  +++ GI ++P SRK L  +G PVV+  +
Sbjct: 127 QRPAALIVAGIDQTPTSRKLLENAGCPVVQVME 159