BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0059.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0483 [E] COG0765 ABC-type amino acid transport system, permea... 352 4e-97 STM0663 [E] COG0765 ABC-type amino acid transport system, permea... 294 1e-79 YPO2613 [E] COG0765 ABC-type amino acid transport system, permea... 291 6e-79 gltK [E] COG0765 ABC-type amino acid transport system, permease ... 291 7e-79 ZgltK [E] COG0765 ABC-type amino acid transport system, permease... 291 7e-79 >RSc0483 [E] COG0765 ABC-type amino acid transport system, permease component Rso Ralstonia solanacearum Length = 227 Score = 352 bits (903), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 169/226 (74%), Positives = 195/226 (86%) Query: 1 MSYQFDFSSITPAAVAVLGHGMAISLQITATAIVFGIVWGTLLAMMRLSPSKPLQWFASG 60 M+YQFDF+S+ + VLG GM +SL+ITATAI+ GIVWGTLLAMMRLS KPLQWF Sbjct: 1 MAYQFDFTSVNADNLRVLGEGMVLSLEITATAILVGIVWGTLLAMMRLSGIKPLQWFGQA 60 Query: 61 YVNLFRSIPLVMVLLWFFLIVPQLLQKVFHLSASNDLRMISALVAFSLFEAAYYSEIIRA 120 YVNLFRSIPLVMVLLWFFLIVPQ+LQK+F+LS + D+RM SALVAF+LFEAAYYSEIIRA Sbjct: 61 YVNLFRSIPLVMVLLWFFLIVPQVLQKLFNLSPATDMRMTSALVAFALFEAAYYSEIIRA 120 Query: 121 GIKSVARGQLAAAFALGLTYTQTMRLIVLPQAFRNMVPLLLTQGIILFQDTSLVYVSALA 180 GI+SV+RGQ+ AA+A+G+TY Q MRL++LPQAFRNM+PLLLTQ IILFQDTSLVYVSAL+ Sbjct: 121 GIQSVSRGQMFAAYAMGMTYGQAMRLVILPQAFRNMIPLLLTQAIILFQDTSLVYVSALS 180 Query: 181 DFFGRAYGIGERDGRIIELLFFAGAVYFAICFSVSLCVKRFQKKAT 226 DFF +AY IGERDGRI+ELL FAG YF ICF S+ VKR QKK T Sbjct: 181 DFFTQAYNIGERDGRIVELLLFAGFCYFVICFGASVLVKRLQKKVT 226 >STM0663 [E] COG0765 ABC-type amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 224 Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 145/222 (65%), Positives = 179/222 (80%), Gaps = 1/222 (0%) Query: 3 YQFDFSSITPAAVAVLGHGMAISLQITATAIVFGIVWGTLLAMMRLSPSKPLQWFASGYV 62 Y+FD+SSI P+ +L G+ I+L+IT TA++ GIVWGT+LA+MRLS P+ WFA YV Sbjct: 2 YEFDWSSIIPSLPYLLA-GLVITLKITVTAVIVGIVWGTILAVMRLSSFAPIAWFAKAYV 60 Query: 63 NLFRSIPLVMVLLWFFLIVPQLLQKVFHLSASNDLRMISALVAFSLFEAAYYSEIIRAGI 122 N+FRSIPLVMVLLWF+LIVP LQ V LS D+R+ISA+VAFS+FEAAYYSEIIRAGI Sbjct: 61 NVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKTDIRLISAMVAFSMFEAAYYSEIIRAGI 120 Query: 123 KSVARGQLAAAFALGLTYTQTMRLIVLPQAFRNMVPLLLTQGIILFQDTSLVYVSALADF 182 +S++RGQ +AA ALG+T+ Q+M+LI+LPQAFR MVPLLLTQGI+LFQDTSLVYV +LADF Sbjct: 121 QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF 180 Query: 183 FGRAYGIGERDGRIIELLFFAGAVYFAICFSVSLCVKRFQKK 224 F A IGERDG +E++ FAGAVYF I S SL V +K+ Sbjct: 181 FRTASTIGERDGTQVEMILFAGAVYFVISLSASLLVSYLKKR 222 >YPO2613 [E] COG0765 ABC-type amino acid transport system, permease component Ype Yersinia pestis Length = 224 Score = 291 bits (746), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 143/222 (64%), Positives = 179/222 (80%), Gaps = 1/222 (0%) Query: 3 YQFDFSSITPAAVAVLGHGMAISLQITATAIVFGIVWGTLLAMMRLSPSKPLQWFASGYV 62 Y+FD+SSI P+ + L G+ ++++IT AIVFGI+WGT+LA+MRLSP K + WFA+ YV Sbjct: 2 YEFDWSSIAPS-LPYLLQGLIVTVKITLIAIVFGILWGTILAVMRLSPIKAISWFATAYV 60 Query: 63 NLFRSIPLVMVLLWFFLIVPQLLQKVFHLSASNDLRMISALVAFSLFEAAYYSEIIRAGI 122 N+FRSIPLVMVLLWF+L+VP LQ V LS D+R+ISA+VAFSLFEAAYYSEIIRAGI Sbjct: 61 NVFRSIPLVMVLLWFYLVVPGFLQNVLGLSPKTDIRLISAMVAFSLFEAAYYSEIIRAGI 120 Query: 123 KSVARGQLAAAFALGLTYTQTMRLIVLPQAFRNMVPLLLTQGIILFQDTSLVYVSALADF 182 +S++RGQ +AA ALG+T Q+MRL++LPQAFR MVPLLLTQGI+LFQDTSLVYV +LADF Sbjct: 121 QSISRGQSSAALALGMTQGQSMRLVILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF 180 Query: 183 FGRAYGIGERDGRIIELLFFAGAVYFAICFSVSLCVKRFQKK 224 F A IGERDG +E++ FAG VYF I S S+ V +K+ Sbjct: 181 FRTATTIGERDGTQVEMVLFAGLVYFVISISASMLVNYLKKR 222 >gltK [E] COG0765 ABC-type amino acid transport system, permease component Eco Escherichia coli K12 Length = 224 Score = 291 bits (746), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 144/222 (64%), Positives = 179/222 (80%), Gaps = 1/222 (0%) Query: 3 YQFDFSSITPAAVAVLGHGMAISLQITATAIVFGIVWGTLLAMMRLSPSKPLQWFASGYV 62 Y+FD+SSI P+ + L G+ I+L+IT TA+V GI+WGT+LA+MRLS P+ WFA YV Sbjct: 2 YEFDWSSIVPS-LPYLLDGLVITLKITVTAVVIGILWGTMLAVMRLSSFAPVAWFAKAYV 60 Query: 63 NLFRSIPLVMVLLWFFLIVPQLLQKVFHLSASNDLRMISALVAFSLFEAAYYSEIIRAGI 122 N+FRSIPLVMVLLWF+LIVP LQ V LS ND+R+ISA+VAFS+FEAAYYSEIIRAGI Sbjct: 61 NVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMVAFSMFEAAYYSEIIRAGI 120 Query: 123 KSVARGQLAAAFALGLTYTQTMRLIVLPQAFRNMVPLLLTQGIILFQDTSLVYVSALADF 182 +S++RGQ +AA ALG+T+ Q+M+LI+LPQAFR MVPLLLTQGI+LFQDTSLVYV +LADF Sbjct: 121 QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF 180 Query: 183 FGRAYGIGERDGRIIELLFFAGAVYFAICFSVSLCVKRFQKK 224 F A IGERDG +E++ FAG VYF I S SL V +++ Sbjct: 181 FRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKRR 222 >ZgltK [E] COG0765 ABC-type amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 224 Score = 291 bits (746), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 144/222 (64%), Positives = 179/222 (80%), Gaps = 1/222 (0%) Query: 3 YQFDFSSITPAAVAVLGHGMAISLQITATAIVFGIVWGTLLAMMRLSPSKPLQWFASGYV 62 Y+FD+SSI P+ + L G+ I+L+IT TA+V GI+WGT+LA+MRLS P+ WFA YV Sbjct: 2 YEFDWSSIVPS-LPYLLDGLVITLKITVTAVVIGILWGTMLAVMRLSSFAPVAWFAKAYV 60 Query: 63 NLFRSIPLVMVLLWFFLIVPQLLQKVFHLSASNDLRMISALVAFSLFEAAYYSEIIRAGI 122 N+FRSIPLVMVLLWF+LIVP LQ V LS ND+R+ISA+VAFS+FEAAYYSEIIRAGI Sbjct: 61 NVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMVAFSMFEAAYYSEIIRAGI 120 Query: 123 KSVARGQLAAAFALGLTYTQTMRLIVLPQAFRNMVPLLLTQGIILFQDTSLVYVSALADF 182 +S++RGQ +AA ALG+T+ Q+M+LI+LPQAFR MVPLLLTQGI+LFQDTSLVYV +LADF Sbjct: 121 QSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADF 180 Query: 183 FGRAYGIGERDGRIIELLFFAGAVYFAICFSVSLCVKRFQKK 224 F A IGERDG +E++ FAG VYF I S SL V +++ Sbjct: 181 FRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKRR 222