BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0056.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0084 [ET] COG0834 ABC-type amino acid transport/signal transd... 291 1e-78 YPO2615 [ET] COG0834 ABC-type amino acid transport/signal transd... 267 2e-71 STM0665 [ET] COG0834 ABC-type amino acid transport/signal transd... 257 3e-68 ZybeJ [ET] COG0834 ABC-type amino acid transport/signal transduc... 252 9e-67 ECs0694 [ET] COG0834 ABC-type amino acid transport/signal transd... 252 9e-67 >RSc0084 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 301 Score = 291 bits (745), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 139/226 (61%), Positives = 179/226 (79%), Gaps = 1/226 (0%) Query: 3 RFTHPLLALLSTLACASAVHAADA-GLGPTLQKIKDGNVIAIGHRTSSIPFSYYDENQKV 61 RFT + L A A++V A A L TL+KI+D N I IG R SSIPFSY D ++ Sbjct: 2 RFTLRCIPLALAGAIAASVLPAQAEALDGTLKKIQDSNTILIGVRESSIPFSYRDSKNQI 61 Query: 62 VGYSQDLCNKAIDAVKAKLNLPNLEVRMIPVTSQNRTPLLQNGTIDLECGVTSNLKDRWQ 121 +G+S DLC++ IDAVK K+ P+L+V+ IPVTSQNRT L+QNG++DLECGVT++LK R Q Sbjct: 62 IGFSADLCSRVIDAVKQKVGKPDLQVQQIPVTSQNRTALVQNGSVDLECGVTTHLKSREQ 121 Query: 122 QVSFNTTFFVASSRILTRKDSGIKDFPDLAGKAVVTNAGTTSERLLRTLNERRKMNMQIQ 181 Q +F+TTFF+A++R+LT SG+KDFPDLAGK+V+TNAGTTSER+LR +N+ +KMNM + Sbjct: 122 QTAFSTTFFIAATRLLTSTHSGVKDFPDLAGKSVITNAGTTSERILRKMNDEKKMNMNVI 181 Query: 182 SAKDYGEAFLILQSGRVAAYVMDDILLAGARTTAQKPNDWLLTGTP 227 S KDYGE+FL LQSGRV A++MDD+LLAGART AQKP DW++TGTP Sbjct: 182 SGKDYGESFLTLQSGRVQAFMMDDVLLAGARTLAQKPADWVVTGTP 227 >YPO2615 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ype Yersinia pestis Length = 305 Score = 267 bits (683), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/221 (57%), Positives = 164/221 (74%), Gaps = 2/221 (0%) Query: 8 LLALLSTLACAS-AVHAADAGLGPTLQKIKDGNVIAIGHRTSSIPFSYYDENQKVVGYSQ 66 L + S++A A A AD + TLQK+K+ VI +GHR SS+PFSYYD QKVVGYSQ Sbjct: 12 LAGMTSSVAQAEDATAKADTAID-TLQKVKNNGVIVVGHRESSVPFSYYDNQQKVVGYSQ 70 Query: 67 DLCNKAIDAVKAKLNLPNLEVRMIPVTSQNRTPLLQNGTIDLECGVTSNLKDRWQQVSFN 126 D N +DA++ +LN PNLEV++IP+TSQNR PLLQNGT D ECG T+N +R QQ +F+ Sbjct: 71 DYSNLIVDAIRKELNAPNLEVKLIPITSQNRIPLLQNGTFDFECGSTTNNLERQQQAAFS 130 Query: 127 TTFFVASSRILTRKDSGIKDFPDLAGKAVVTNAGTTSERLLRTLNERRKMNMQIQSAKDY 186 T FV +R+LT+KDS +KDF DLAGKAVV +GTTSE LL LNE+ MNM+I SAKD+ Sbjct: 131 NTIFVVGTRLLTKKDSEVKDFKDLAGKAVVVTSGTTSEVLLNKLNEKDNMNMRIISAKDH 190 Query: 187 GEAFLILQSGRVAAYVMDDILLAGARTTAQKPNDWLLTGTP 227 G++F L+SGR A++MDD LLAG R A+KP++W + GTP Sbjct: 191 GDSFRTLESGRAVAFMMDDALLAGERAKAKKPDEWSIVGTP 231 >STM0665 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sty Salmonella typhimurium LT2 Length = 308 Score = 257 bits (656), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 124/227 (54%), Positives = 160/227 (70%), Gaps = 1/227 (0%) Query: 1 MKRFTHPLLALLSTLACASAVHAADAGLGPTLQKIKDGNVIAIGHRTSSIPFSYYDENQK 60 +++ T +L + + A A A A G TL KI VI +GHR SS+PFSYYD QK Sbjct: 9 LRKLTTAMLVMGLSAGLAHAEDGAPAA-GSTLDKIAKNGVIVVGHRESSVPFSYYDNQQK 67 Query: 61 VVGYSQDLCNKAIDAVKAKLNLPNLEVRMIPVTSQNRTPLLQNGTIDLECGVTSNLKDRW 120 VVGYSQD N ++AVK KLN P+L+V++IP+TSQNR PLLQNGT D ECG T+N +R Sbjct: 68 VVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNLERQ 127 Query: 121 QQVSFNTTFFVASSRILTRKDSGIKDFPDLAGKAVVTNAGTTSERLLRTLNERRKMNMQI 180 +Q +F+ T FV +R+LT+K IKDFPDL GKAVV +GTTSE LL LNE +KM M+I Sbjct: 128 KQAAFSDTIFVVGTRLLTKKGGDIKDFPDLKGKAVVVTSGTTSEILLHKLNEEQKMGMRI 187 Query: 181 QSAKDYGEAFLILQSGRVAAYVMDDILLAGARTTAQKPNDWLLTGTP 227 SAKD+G++F L+SGR A++MDD LLAG R A+KP++W + G P Sbjct: 188 ISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKP 234 >ZybeJ [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain EcZ Escherichia coli O157:H7 EDL933 Length = 302 Score = 252 bits (643), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 118/199 (59%), Positives = 148/199 (74%) Query: 29 GPTLQKIKDGNVIAIGHRTSSIPFSYYDENQKVVGYSQDLCNKAIDAVKAKLNLPNLEVR 88 G TL KI VI +GHR SS+PFSYYD QKVVGYSQD N ++AVK KLN P+L+V+ Sbjct: 30 GSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVK 89 Query: 89 MIPVTSQNRTPLLQNGTIDLECGVTSNLKDRWQQVSFNTTFFVASSRILTRKDSGIKDFP 148 +IP+TSQNR PLLQNGT D ECG T+N +R +Q +F+ T FV +R+LT+K IKDF Sbjct: 90 LIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFA 149 Query: 149 DLAGKAVVTNAGTTSERLLRTLNERRKMNMQIQSAKDYGEAFLILQSGRVAAYVMDDILL 208 DL GKAVV +GTTSE LL LNE +KMNM+I SAKD+G++F L+SGR A++MDD LL Sbjct: 150 DLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALL 209 Query: 209 AGARTTAQKPNDWLLTGTP 227 AG R A+KP++W + G P Sbjct: 210 AGERAKAKKPDNWDIVGKP 228 >ECs0694 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ecs Escherichia coli O157:H7 Length = 302 Score = 252 bits (643), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 118/199 (59%), Positives = 148/199 (74%) Query: 29 GPTLQKIKDGNVIAIGHRTSSIPFSYYDENQKVVGYSQDLCNKAIDAVKAKLNLPNLEVR 88 G TL KI VI +GHR SS+PFSYYD QKVVGYSQD N ++AVK KLN P+L+V+ Sbjct: 30 GSTLDKIAKNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVK 89 Query: 89 MIPVTSQNRTPLLQNGTIDLECGVTSNLKDRWQQVSFNTTFFVASSRILTRKDSGIKDFP 148 +IP+TSQNR PLLQNGT D ECG T+N +R +Q +F+ T FV +R+LT+K IKDF Sbjct: 90 LIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFA 149 Query: 149 DLAGKAVVTNAGTTSERLLRTLNERRKMNMQIQSAKDYGEAFLILQSGRVAAYVMDDILL 208 DL GKAVV +GTTSE LL LNE +KMNM+I SAKD+G++F L+SGR A++MDD LL Sbjct: 150 DLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALL 209 Query: 209 AGARTTAQKPNDWLLTGTP 227 AG R A+KP++W + G P Sbjct: 210 AGERAKAKKPDNWDIVGKP 228