BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0048.p (261 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr8380 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 93 6e-19 AGl414 [K] COG1802 Transcriptional regulators Atu Agrobacterium ... 79 9e-15 BS_ydhC [K] COG1802 Transcriptional regulators Bsu Bacillus subt... 77 3e-14 SMb20258 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 77 3e-14 mll2325 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 77 3e-14 >mlr8380 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 372 Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 11/223 (4%) Query: 4 SPDPSLMDSVAAEPAKSSSLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVR 63 + +P+ +++ A+E + S + V +LRE I + + PG+++TE + F SRTPVR Sbjct: 136 NSNPAAVNA-ASEQGNAMSQMQNVERQLREMILGLEIGPGEKLTERWIEGRFGASRTPVR 194 Query: 64 EALQRLQSDGLMQGYVRGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAID 123 AL RL+++GL+ G GW V P++ + R+ +EV AVR C HA+ AID Sbjct: 195 AALLRLETEGLV-GRDGRGWTVSPINLAELEQIAVYREAVEVAAVRLTCM-HAESS-AID 251 Query: 124 MAQIEALKADWCVPVEQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIRIVR 183 + + D P E+ G +D FH L R +GN+ + A R+ R Sbjct: 252 VIEAMLDSCDQNTPREEWHRVG-----MD--FHIELARLSGNEFLFRAVRDAMTRLSRAR 304 Query: 184 RLDFVYGDCVGSTYEEHAAILAQIDARAGDEAVRLITEHIDGS 226 L+ +G + EH AILA DEA RL+ HI GS Sbjct: 305 WLEVRDEAALGRAWAEHRAILAAARLGDADEAARLLCAHIVGS 347 >AGl414 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 344 Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 8/219 (3%) Query: 6 DPSLMDSVAAEPAKSSSLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVREA 65 D + D +A+ K S + VY LR++I ++ L PG + E ++A FK+SRTP+REA Sbjct: 110 DLVMTDVIASAERKRGSGVKMVYDLLRDEILDLVLPPGSPIDEVQLAERFKMSRTPIREA 169 Query: 66 LQRLQSDGLMQGYVRGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAIDMA 125 L RL +GL+ V +DF ++ L+ ++ V A A R D+A Sbjct: 170 LVRLSGEGLIDTLPNRSTMVSNIDFLNMHTYFD--ALVLMYRVTTQLA--AQYHRPEDLA 225 Query: 126 QIEALKADWCVPVEQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIRIVRRL 185 I A A++ V VE++ + A + + A H + A N S F RL D R + RL Sbjct: 226 GIRAHNAEFAVAVEEQ--NALAMISTNAALHLAIAEAGRNPYFTSLFKRLLDEGRRILRL 283 Query: 186 DF-VYGDCVGSTY-EEHAAILAQIDARAGDEAVRLITEH 222 + Y D + + ++H A++A I R + +L EH Sbjct: 284 YYQSYEDRLPRRFVDDHEAMIAAIATRDIALSEKLAREH 322 >BS_ydhC [K] COG1802 Transcriptional regulators Bsu Bacillus subtilis Length = 224 Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 24 PEYV--YARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVREALQRLQSDGLMQGYVRG 81 P Y+ Y +L++ IF PG+++ ET++A F VSR+P+REA++ L+ DGL++ R Sbjct: 11 PYYLQFYNQLKKMIFNGTFKPGERINETQLAKSFGVSRSPIREAMRLLEKDGLLKADDRN 70 Query: 82 GWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAIDMAQIEALKADWCVPVEQR 141 G+ + + K ++Y++R +E AV + + + I Q+E E+ Sbjct: 71 GFSITSLTAKDVDEIYKIRIPLEQLAVELVIDEADEEELTILEKQLEE--------TEKA 122 Query: 142 LTDGRAAAA---LDEAFHQTLVRATGNQEMASAFDRLTDRIRIVRRLDFVYGDCVGSTYE 198 + +G L++ FH+ LV + N+ + + + + D I R L++ + Sbjct: 123 IHNGTEDTEIIRLNQKFHELLVDFSHNRHLKNLLEHVNDLIHFCRILNYTGDHRAETILR 182 Query: 199 EHAAILAQIDARAGDEAVRLITEHID 224 EH I ++ + + A + + H + Sbjct: 183 EHRRIFEEVKKKNKEAAKQHVLAHFN 208 >SMb20258 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 236 Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 98/199 (49%), Gaps = 8/199 (4%) Query: 11 DSVAAEPAKSSSLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVREALQRLQ 70 D+ +A K S + VY LR++I ++ L PG + E ++A FK+SRTP+REAL RL Sbjct: 7 DTNSAPERKRGSGVKMVYDLLRDEILDLVLPPGCPIDEVQLAERFKMSRTPIREALVRLA 66 Query: 71 SDGLMQGYVRGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAIDMAQIEAL 130 +GL+ V +DF ++ L+ RL A H R+ D+ I A Sbjct: 67 GEGLIATLPNRSTMVSNIDFLNLHTFFDALVLM-YRVTTRLAAEH---HRSDDLEVIRAR 122 Query: 131 KADWCVPVEQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIRIVRRLDF-VY 189 +A++ V+ + D A A + AFH + A N F+RL D R + RL + Y Sbjct: 123 QAEFAAAVQAQ--DALAMIATNAAFHSAIAEAGRNPYFIGLFNRLLDEGRRILRLYYQSY 180 Query: 190 GDCVGSTY-EEHAAILAQI 207 D + + +EH ++A I Sbjct: 181 NDRLPQRFVDEHEDMIAVI 199 >mll2325 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 255 Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 9/212 (4%) Query: 16 EPAKSSSLPEYVYARLREDIFEMRLLPGDQVTETEVAAYFKVSRTPVREALQRLQSDGLM 75 +P +SS +Y +REDI E RL +++ T++A S PVREALQ L+ +G + Sbjct: 35 DPLGASSEGASLYELIREDIIEGRLAANERLVVTDLARRHGTSTNPVREALQLLRGEGFV 94 Query: 76 QGYVRGGWEVVPMDFKRFADLYELRQLIEVHAVRRLCAGHADGKRAIDMAQIEALKADWC 135 G V P+D D+YE+ LIE A+ R A + D+A++E ++ Sbjct: 95 IFLPNRGARVRPIDQDFVRDIYEIGVLIEP-ALTRWFVNMATVE---DIAELERIQG--- 147 Query: 136 VPVEQRLTDGRAAAALDEAFHQTLVRATGNQEMASAFDRLTDRIRIV-RRLDFVYGDCVG 194 + E D + LD AFH + + N+ A + + + +R V RR +F Sbjct: 148 LIEENNFADTFRHSELDTAFHTVMYQRHYNRHAAELWWKHREVLRAVSRRFNFTLARR-A 206 Query: 195 STYEEHAAILAQIDARAGDEAVRLITEHIDGS 226 + EH ++A + A DEA LI H++GS Sbjct: 207 AIIREHRELIAHVKAGNADEAAELIARHVEGS 238