BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0042.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl321 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 282 7e-76 BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 244 3e-64 MA0880 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 236 7e-62 BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 235 1e-61 RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 234 2e-61 >AGl321 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 308 Score = 282 bits (721), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 144/300 (48%), Positives = 200/300 (66%), Gaps = 9/300 (3%) Query: 3 ANMKANMDQAIATPANAADALPRRQRFTGLRRFAGNRLAVLGAAIILLLVLIAIFAPLLA 62 A++ +DQ ++ PA RQ ++ N+ A+ G I+L ++AI AP+L Sbjct: 16 ADIMTVLDQNLSVPAA-------RQESRAWKKMKRNKSALAGLIIVLFFAVLAIAAPILP 68 Query: 63 THDPIFDQDYGNLLSGPDTTHWMGTDDLGRDIFSRMLYGARISLQAALIAVGLAFCVGVP 122 DP+ + + P HW+GTDDLGRDI SRM+YGAR SL A +++V +A +GVP Sbjct: 69 IADPV-ATSWSAIRKAPSAAHWLGTDDLGRDILSRMIYGARASLMAGVVSVMIAVVIGVP 127 Query: 123 VGIASGYFRGFWDEWVVMRIVDALQAFPPLILALALAAALGGGFYNAMAAVGIGFAPAFI 182 G+ +GYF G W + V+ RI +AL A P LI+A+ALAA LG NAM A+G+ P F+ Sbjct: 128 FGLIAGYFGG-WVDMVISRITEALLAMPFLIMAIALAAFLGPSLTNAMIAIGLSAMPIFV 186 Query: 183 RLARGQAMSIRNLDYVMAARSVGAGHLRIMWRYVLPNAMAPLIIQATFAMGSAIIAEAGL 242 RL RGQ ++++ DYV ARS+G H+ IM RY+LPN AP+I+QAT + +AIIAEA L Sbjct: 187 RLTRGQVLAVKMEDYVEGARSIGLNHIDIMTRYILPNVFAPIIVQATLTVATAIIAEASL 246 Query: 243 SYLGLGARAEDPSWGSMLHIAQGYLNTNPTLALWPGVAIFAVVLGFNLLGDGIREVFDPK 302 S+LGLG +A PSWGSML+ A+ +L+ P + LWPG+AIF VV+GFNLLGDG+R+ DP+ Sbjct: 247 SFLGLGQQAPAPSWGSMLNTAKNFLSQAPWMTLWPGIAIFLVVIGFNLLGDGLRDALDPR 306 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bha Bacillus halodurans Length = 301 Score = 244 bits (622), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 122/300 (40%), Positives = 192/300 (64%), Gaps = 4/300 (1%) Query: 5 MKANMDQAIATPANAADAL-PRRQRFTGL-RRFAGNRLAVLGAAIILLLVLIAIFAPLLA 62 M A +Q I + A AA PR Q + ++ A N+ A++G ++I+ +++A+ P Sbjct: 1 MSAQTEQTINSEATAAPPPNPRIQSWKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPYFT 60 Query: 63 THDPIFDQDYGNLLSGPDTTHWMGTDDLGRDIFSRMLYGARISLQAALIAVGLAFCVGVP 122 THDP ++ + N L+ P HW GTD GRDIF+R+++G I+L +V L VGV Sbjct: 61 THDP-YEPNVMNKLAEPSAEHWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVI 119 Query: 123 VGIASGYFRGFWDEWVVMRIVDALQAFPPLILALALAAALGGGFYNAMAAVGIGFAPAFI 182 +G+ SGY+ D V+MRI+D L AFP ++LALA+ + LGG N + AVGI P F Sbjct: 120 LGVVSGYYGRLVDT-VIMRIMDVLLAFPGILLALAIISILGGSINNVIIAVGIFSIPVFA 178 Query: 183 RLARGQAMSIRNLDYVMAARSVGAGHLRIMWRYVLPNAMAPLIIQATFAMGSAIIAEAGL 242 R+ RG +++R L+Y+ A +++GA RI+++++LPN ++P+I+Q T ++ ++I+ + L Sbjct: 179 RIVRGSTLAVRKLEYIDAVKALGASDARIIFKHILPNVLSPIIVQGTLSIATSILTASAL 238 Query: 243 SYLGLGARAEDPSWGSMLHIAQGYLNTNPTLALWPGVAIFAVVLGFNLLGDGIREVFDPK 302 S+LGLGA+ P WG+ML + Y+ P +AL+PG+AI VVL FN+ GDG+R+ DPK Sbjct: 239 SFLGLGAQPPIPEWGAMLSDGRNYMYDAPHVALFPGLAIVVVVLAFNIFGDGLRDALDPK 298 >MA0880 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Mac Methanosarcina acetivorans str.C2A Length = 278 Score = 236 bits (601), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 119/273 (43%), Positives = 180/273 (65%), Gaps = 2/273 (0%) Query: 33 RRFAGNRLAVLGAAIILLLVLIAIFAPLLATHDPIFDQDYGNLLSGPDTTHWMGTDDLGR 92 +R N++A++G A+I L+ A+FAP +A HDP+ + + G P + MGTDDLGR Sbjct: 4 QRLKKNKIAMIGLAMITFLLFFAVFAPWIAPHDPV-EPNLGKRFLSPCKEYPMGTDDLGR 62 Query: 93 DIFSRMLYGARISLQAALIAVGLAFCVGVPVGIASGYFRGFWDEWVVMRIVDALQAFPPL 152 + SR++YGAR+SLQ ++ VG+ +GV +G+ SGYF G DE ++MR VD + AFP + Sbjct: 63 CVLSRVIYGARVSLQVSMTVVGIITVIGVTLGLISGYFGGALDE-LIMRFVDIVLAFPGI 121 Query: 153 ILALALAAALGGGFYNAMAAVGIGFAPAFIRLARGQAMSIRNLDYVMAARSVGAGHLRIM 212 ILA+A+A ALG G +N M A+ + F R+ R M+++ ++V +AR++G L IM Sbjct: 122 ILAMAVAGALGPGLFNVMLALALVSWTGFARVVRSSVMAVKEKEFVESARALGCNDLYIM 181 Query: 213 WRYVLPNAMAPLIIQATFAMGSAIIAEAGLSYLGLGARAEDPSWGSMLHIAQGYLNTNPT 272 R++LPN + P+++ AT MG I+A A LS+LGLGA+ P WGSML+ + ++ T P Sbjct: 182 TRHILPNVITPVLVLATLDMGFIILAAASLSFLGLGAQPPIPDWGSMLNNGRVFMRTAPF 241 Query: 273 LALWPGVAIFAVVLGFNLLGDGIREVFDPKLYR 305 L ++PG+AI V+ FN LGDG+R+ DP+ R Sbjct: 242 LTIFPGIAITTAVMAFNFLGDGLRDALDPRPQR 274 >BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bha Bacillus halodurans Length = 306 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 126/281 (44%), Positives = 186/281 (66%), Gaps = 7/281 (2%) Query: 24 PRRQRFTGLRRFAGNRLAVLGAAIILLLVLIAIFAPLLATHDPIFD-QDYGNLLSGPDTT 82 P R F LR+ N+LA+ G I+ + IA+FAPLL TH FD D + L P Sbjct: 30 PWRDAFRQLRK---NKLAMTGIVIVCFFLFIALFAPLLTTHS--FDGYDAASRLQSPSAE 84 Query: 83 HWMGTDDLGRDIFSRMLYGARISLQAALIAVGLAFCVGVPVGIASGYFRGFWDEWVVMRI 142 HW GTDDLGRD+F+R+ YGA++SLQ AV A VG +G+ +GY+ G W + ++ RI Sbjct: 85 HWFGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVLAGYY-GRWLDMLISRI 143 Query: 143 VDALQAFPPLILALALAAALGGGFYNAMAAVGIGFAPAFIRLARGQAMSIRNLDYVMAAR 202 D + AFP ++LA+A+ A LG +NAM A+ I P F RL R + +S+R +++MAAR Sbjct: 144 FDIMLAFPSILLAIAIVAILGPSLHNAMVAIAIVNIPIFGRLVRSKVISLRAEEFIMAAR 203 Query: 203 SVGAGHLRIMWRYVLPNAMAPLIIQATFAMGSAIIAEAGLSYLGLGARAEDPSWGSMLHI 262 + G + RI++ ++LPN+++P+I+QAT G+AI+ A L +LGLGA+A WG ML Sbjct: 204 AQGMKNSRILFHHILPNSLSPIIVQATLGFGTAILEAAALGFLGLGAQAPLAEWGKMLAD 263 Query: 263 AQGYLNTNPTLALWPGVAIFAVVLGFNLLGDGIREVFDPKL 303 ++ Y+ T P +A++PG++I VVLGFN++GDG+R+ DPK+ Sbjct: 264 SRAYIQTAPWVAIFPGMSIMLVVLGFNMIGDGLRDALDPKM 304 >RSc1382 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Rso Ralstonia solanacearum Length = 299 Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 121/273 (44%), Positives = 175/273 (64%), Gaps = 1/273 (0%) Query: 33 RRFAGNRLAVLGAAIILLLVLIAIFAPLLATHDPIFDQDYGNLLSGPDTTHWMGTDDLGR 92 R+F LA+ ++ LV+ AI AP L DP DY L +GP HW G D LGR Sbjct: 27 RKFRKQHLALGAGVFVIALVVAAILAPHLVPFDPENYFDYDALNAGPSAAHWFGVDSLGR 86 Query: 93 DIFSRMLYGARISLQAALIAVGLAFCVGVPVGIASGYFRGFWDEWVVMRIVDALQAFPPL 152 DIFSR+L G RISL+A ++V + +G +G+ +GY+ G+WD +VMRI D L AFP + Sbjct: 87 DIFSRILMGTRISLEAGFVSVVIGALIGTVLGLLAGYYEGWWDR-IVMRICDVLFAFPGI 145 Query: 153 ILALALAAALGGGFYNAMAAVGIGFAPAFIRLARGQAMSIRNLDYVMAARSVGAGHLRIM 212 +LA+ + A LG G N + AV + PAF RL RG + +++L YV AARS+GA I+ Sbjct: 146 LLAIGIVAILGNGMANVIFAVAVFSVPAFARLVRGNTLMLKHLTYVEAARSIGASDRTIL 205 Query: 213 WRYVLPNAMAPLIIQATFAMGSAIIAEAGLSYLGLGARAEDPSWGSMLHIAQGYLNTNPT 272 R++LP ++ +++ + +G++II A LS+LGLGA+ P WG+ML+ A+ + T P Sbjct: 206 LRHILPGTISSIVVYFSMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARADMVTAPH 265 Query: 273 LALWPGVAIFAVVLGFNLLGDGIREVFDPKLYR 305 +A++P +AIF VL FNLLGDG+R+ DPK+ R Sbjct: 266 VAIFPSLAIFLTVLAFNLLGDGLRDALDPKIDR 298