BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0041.p (312 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl323 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 272 6e-73 BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tr... 270 3e-72 MA4250 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 261 1e-69 BH0029 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 255 9e-68 STM3629 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 253 5e-67 >AGl323 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 328 Score = 272 bits (696), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 143/306 (46%), Positives = 204/306 (66%) Query: 6 KRILLVIPTLLLVSMVIFSLLAILPGDPVTAILGLEATPEAAAALRLQLGLDDPLYVQYA 65 KR+L+ IPTLL++S+ +FSL +LPGDPV A+ G E P LR + L+DP+ +QY Sbjct: 20 KRLLVAIPTLLIISIFVFSLQKLLPGDPVLAMAGEERDPATIEFLREKYRLNDPVPLQYL 79 Query: 66 RWLWNVLHGDLGRSFIDRTPVIDVLMQRLPVTIELAVGSFAVGILIAVPAGILSAVRPRG 125 WL V+ GD G S PV++++ Q+LPVTI+LAV + ++I +P GIL+AV+ Sbjct: 80 NWLGGVVTGDFGISLRTNQPVLELIGQKLPVTIQLAVMAMFFAMVIGIPIGILAAVKKNT 139 Query: 126 IANYFTTLVALFGMSVPHFWLGMMFIILFAVKLGWLPASGYVPFTEDWRGNLAAMCMPVL 185 +Y +VAL G+S+P+FWLG+M I+L +VKLGWLPASGY D ++ M MP Sbjct: 140 WIDYTANIVALSGLSIPNFWLGIMLILLVSVKLGWLPASGYESIFVDPVRSIETMIMPAF 199 Query: 186 ATGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVIGHALRNALIPVVTASGLM 245 G +A LMR RS+++ VL+ DYIRTA +KGL ++++ H+ RNAL+PV+T L+ Sbjct: 200 VLGNALAATLMRHTRSAMVAVLSSDYIRTARAKGLSPREIILSHSFRNALLPVITLLALL 259 Query: 246 VSVLLGGLVITESIFAIPGMGKMIVDAIFQRDYVMVQGGVLAAALMVVIVNLAVDVLYTV 305 LL G V+TE IF IPG GKM VDA+F RDY +VQG VL A+ +++NL D+ Y + Sbjct: 260 FGELLAGAVLTEQIFTIPGFGKMTVDAVFTRDYAVVQGIVLCTAVGFILMNLLADIAYVL 319 Query: 306 IDPRIE 311 ++PR+ Sbjct: 320 LNPRLR 325 >BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bme Brucella melitensis Length = 315 Score = 270 bits (691), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 137/308 (44%), Positives = 205/308 (66%) Query: 4 LIKRILLVIPTLLLVSMVIFSLLAILPGDPVTAILGLEATPEAAAALRLQLGLDDPLYVQ 63 ++KR+ IP +L+V+++ F L+ +LPGDP I G A+PE +R++LGLD P VQ Sbjct: 6 ILKRVAQAIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVELGLDQPTVVQ 65 Query: 64 YARWLWNVLHGDLGRSFIDRTPVIDVLMQRLPVTIELAVGSFAVGILIAVPAGILSAVRP 123 +WLWN+ H DLGRSF+ PV + +RLPVTI LA+ +FA+ I + + G+++A Sbjct: 66 LGQWLWNLFHFDLGRSFLLSQPVSQAIAERLPVTISLALLAFAITIPVGIIMGVVAAYLR 125 Query: 124 RGIANYFTTLVALFGMSVPHFWLGMMFIILFAVKLGWLPASGYVPFTEDWRGNLAAMCMP 183 + +AL G+SVP FWL ++ +ILF+V LGW P++GYVPF + G L ++ +P Sbjct: 126 DSWFDTGVMSLALLGVSVPSFWLAILAVILFSVTLGWFPSAGYVPFLDSPLGWLRSLILP 185 Query: 184 VLATGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVIGHALRNALIPVVTASG 243 L + L RM RS +LEV+++DYIRTA SKG+ ++ V+ HA RNAL+ V+T SG Sbjct: 186 ASILALFQIGYLARMTRSEMLEVMDQDYIRTARSKGVSEYSVLSTHAFRNALVSVLTVSG 245 Query: 244 LMVSVLLGGLVITESIFAIPGMGKMIVDAIFQRDYVMVQGGVLAAALMVVIVNLAVDVLY 303 + S+L+GG V+ E IFA+PG+G+++V AI RD +VQG +L + V +N+ VD+LY Sbjct: 246 YIFSLLIGGSVVIEQIFALPGLGRLLVQAILARDLPVVQGTMLFLGFLFVAINVLVDILY 305 Query: 304 TVIDPRIE 311 T+ DPR+ Sbjct: 306 TIADPRVR 313 >MA4250 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Mac Methanosarcina acetivorans str.C2A Length = 315 Score = 261 bits (668), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 136/314 (43%), Positives = 205/314 (65%), Gaps = 8/314 (2%) Query: 1 MSPLIKRILLVIPTLLLVSMVIFSLLAILPGDPVTAILGLE---ATPEAAAALRLQLGLD 57 ++ ++++I+ + P L +S+V FSL+ + PGDP IL A P A R++ G D Sbjct: 2 LTHILRKIVFMAPVFLFISIVSFSLIYVTPGDPAEIILTSSSGGADPAAVEEFRIKEGFD 61 Query: 58 DPLYVQYARWLWNVLHGDLGRSFIDRTPVIDVLMQRLPVTIELAVGSFAVGILIAVPAGI 117 PLYVQY WL +VLHG+LG S++ PV + ++Q T++LA+ SF V ++I++PAGI Sbjct: 62 KPLYVQYLNWLGDVLHGELGYSYMSERPVSEAILQAFSATLKLAIASFLVSLVISIPAGI 121 Query: 118 LSAVRPRGIANYFTTLVALFGMSVPHFWLGMMFIILFAVKLGWLPASGYVPFTEDWRGNL 177 L+A++ + + L AL G+S+P+FW G + I++FAV L LPA G F E+ G+ Sbjct: 122 LAALKRDTWIDDLSRLFALLGVSMPNFWQGYLMILVFAVFLRILPAGG---FGEN--GDF 176 Query: 178 AAMCMPVLATGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVIGHALRNALIP 237 + +P+L G +AI MR+ RSS LEVL EDYI A +KGL + V+ HAL+NA+IP Sbjct: 177 LHLILPMLTLGTSSAAITMRLTRSSFLEVLQEDYIYAARAKGLSEKVVIGKHALKNAMIP 236 Query: 238 VVTASGLMVSVLLGGLVITESIFAIPGMGKMIVDAIFQRDYVMVQGGVLAAALMVVIVNL 297 V+T +GL LL G + E++FA PG+G +IV++I+ RDY M+QG +L A++ V +NL Sbjct: 237 VITMAGLNFGYLLNGSAVVETVFAWPGLGNLIVNSIYNRDYPMIQGTLLFVAVLFVTINL 296 Query: 298 AVDVLYTVIDPRIE 311 VD+ Y+ +DPRI Sbjct: 297 LVDLSYSYLDPRIR 310 >BH0029 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bha Bacillus halodurans Length = 314 Score = 255 bits (652), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 139/313 (44%), Positives = 208/313 (66%), Gaps = 10/313 (3%) Query: 4 LIKRILLVIPTLLLVSMVIFSLLAILPGDPVTAILGLEATPEAAAALRLQLGLDDPLYVQ 63 +I+R+L IP L+ VS+++FSLL ++PGDP I G A + +R +LGL+DP+ VQ Sbjct: 5 IIRRLLQTIPVLIGVSIIVFSLLHLVPGDPAIMIAGESAPQQTVENIRERLGLNDPVPVQ 64 Query: 64 YARWLWNVLHGDLGRSFIDRTPVIDVLMQRLPVTIELAVGSFAVGILIAVPAGILSAVRP 123 Y ++ V+ GDLG SF PV D + QR VT+EL++ S + + + + AGI+SA + Sbjct: 65 YFNYVSGVIQGDLGTSFRSGRPVADDIAQRFWVTLELSIYSIILSVFLGLIAGIVSATKR 124 Query: 124 RGIANYFTTLVALFGMSVPHFWLGMMFIILFAVKLGWLPASGYVPFTEDWR-----GNLA 178 A+ ++ALFG+S+P+FWLG+M I FA+ G+ P ++PF W G+ Sbjct: 125 YSFADTSLMIIALFGLSMPNFWLGLMLIQWFAI--GYTP---WLPFDTAWFAPSGWGSFR 179 Query: 179 AMCMPVLATGLRESAILMRMVRSSLLEVLNEDYIRTAFSKGLRDWQVVIGHALRNALIPV 238 + +PV+ G +AI+ RM RSS+LEVL++DYIRTA +KG+++ VV HAL+NALIPV Sbjct: 180 QIVLPVITLGTAGAAIVARMTRSSMLEVLHQDYIRTARAKGVKERVVVYRHALKNALIPV 239 Query: 239 VTASGLMVSVLLGGLVITESIFAIPGMGKMIVDAIFQRDYVMVQGGVLAAALMVVIVNLA 298 VT G+ LLGG V+TE +FAI G+G++I++AI QRD+ +VQG VL +++ V VNL Sbjct: 240 VTVVGIQFGFLLGGSVLTEQVFAINGLGRLIIEAIRQRDFPVVQGAVLVISVLFVFVNLL 299 Query: 299 VDVLYTVIDPRIE 311 VD+ Y ++ RI+ Sbjct: 300 VDITYRFLNKRID 312 >STM3629 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sty Salmonella typhimurium LT2 Length = 339 Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 143/333 (42%), Positives = 208/333 (62%), Gaps = 24/333 (7%) Query: 4 LIKRILLVIPTLLLVSMVIFSLLAILPGDPVTAILGLEA-TPEAAAALRLQLGLDDPLYV 62 +++R+ LVIPT + ++++ F+ + ++PGDPV + G +PE A L +LGLD P++ Sbjct: 5 ILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQ 64 Query: 63 QYARWLWNVLHGDLGRSFIDRTPVIDVLMQRLPVTIELAVGSFAVGILIAVPAGILSAVR 122 QY ++W V+HGDLG S R PV D + R T+EL V + + + +P G+L+AV+ Sbjct: 65 QYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVK 124 Query: 123 PRGIANYFTTLVALFGMSVPHFWLGMMFIILFAVKLGWLPASGYVP---FTED------- 172 I ++ +AL G S+P FW GMM I+L +V P SG V F +D Sbjct: 125 RGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDTNPLTGF 184 Query: 173 -------W--RGN----LAAMCMPVLATGLRESAILMRMVRSSLLEVLNEDYIRTAFSKG 219 W GN LA M +P + G A+++RM RSS+LEVL EDYIRTA +KG Sbjct: 185 MLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKG 244 Query: 220 LRDWQVVIGHALRNALIPVVTASGLMVSVLLGGLVITESIFAIPGMGKMIVDAIFQRDYV 279 L +V+I HALRNA++PVVT GL V LL G ++TE+IF+ PG+G+ ++DA+ +RDY Sbjct: 245 LTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYP 304 Query: 280 MVQGGVLAAALMVVIVNLAVDVLYTVIDPRIER 312 +VQGGVL A M+++VNL VD+LY V++PRI Sbjct: 305 VVQGGVLLVATMIILVNLLVDLLYGVVNPRIRH 337