BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0037.p         (460 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3635 [E] COG1171 Threonine dehydratase Ccr Caulobacter vibrioides   223   7e-58
PA0331 [E] COG1171 Threonine dehydratase Pae Pseudomonas aeruginosa   168   2e-41
Cj0828c [E] COG1171 Threonine dehydratase Cje Campylobacter jejuni    167   4e-41
DR0567 [E] COG1171 Threonine dehydratase Dra Deinococcus radiodu...   166   1e-40
FN1411 [E] COG1171 Threonine dehydratase Fnu Fusobacterium nucle...   162   2e-39

>CC3635 [E] COG1171 Threonine dehydratase Ccr Caulobacter vibrioides
          Length = 400

 Score =  223 bits (568), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 112/178 (62%), Positives = 137/178 (76%), Gaps = 1/178 (0%)

Query: 222 VAGIQRAAARLQGQILNTPCVESRTLSEIVGAQVFLKFENLQFTSSFKERGACNKLTDLA 281
           +A IQ AA RLQGQI  TPC  S+TLS+I GA+V++KFENLQFT+++KERGA NKL  L+
Sbjct: 5   LAAIQAAAGRLQGQIERTPCRHSKTLSKITGAEVWVKFENLQFTAAYKERGALNKLMLLS 64

Query: 282 AA-GVRGVIAMSAGNHAQGVAYHAQRLGLHALIVMPRFTPGVKIERTRGFGAEVVLHGDT 340
                RGVIA SAGNHAQG+AYH  RLG+   IVMP+ TP VK++ TR FGA VV+ G+T
Sbjct: 65  ETEKQRGVIAASAGNHAQGLAYHGARLGVPVTIVMPKTTPFVKVQHTRDFGATVVIEGET 124

Query: 341 LEEARAHAFALAQERGLTFVHPYDDEAIIAGQGTVALEMLDAVPDLDTLVVAIGGGGL 398
            ++A AHA  L  E+GLTFVHP+DD  I+AGQGT+ALEML+  PDL+ L V IGGGGL
Sbjct: 125 YDDANAHARKLRDEQGLTFVHPFDDYDIMAGQGTIALEMLEDAPDLEILPVPIGGGGL 182


>PA0331 [E] COG1171 Threonine dehydratase Pae Pseudomonas aeruginosa
          Length = 504

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 113/171 (66%), Gaps = 2/171 (1%)

Query: 230 ARLQGQILNTPCVESRTLSEIVGAQVFLKFENLQFTSSFKERGACNKLTDLAAA-GVRGV 288
           +R+    + TP   +R LSE +G QV LK E+LQ   SFK RGA NK+  L      RGV
Sbjct: 12  SRVYDVAVETPLQPARQLSERLGNQVLLKREDLQPVFSFKIRGAYNKVAQLTEEEKARGV 71

Query: 289 IAMSAGNHAQGVAYHAQRLGLHALIVMPRFTPGVKIERTRGFGAEVVLHGDTLEEARAHA 348
           IA SAGNHAQG+A  A+R G+ A+IVMP+ TP +K++  R  GA+ VLHGD   EA AHA
Sbjct: 72  IAASAGNHAQGLALAAKRQGIRAVIVMPKTTPEIKVQAVRAHGAKAVLHGDAFPEALAHA 131

Query: 349 FALAQERGLTFVHPYDDEAIIAGQGTVALEMLDAVPD-LDTLVVAIGGGGL 398
             L  E+G TFVHPYDD   IAGQGTVA+E+L   P  LD + V +GGGGL
Sbjct: 132 LKLVDEKGYTFVHPYDDPDTIAGQGTVAMEILRQQPGRLDAIFVPVGGGGL 182


>Cj0828c [E] COG1171 Threonine dehydratase Cje Campylobacter jejuni
          Length = 403

 Score =  167 bits (424), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 117/170 (68%), Gaps = 1/170 (0%)

Query: 225 IQRAAARLQGQILNTPCVESRTLSEIVGAQVFLKFENLQFTSSFKERGACNKLTDLAAAG 284
           I +A  ++ G +  TP + S  LS+I  ++++LK ENLQ T ++K RGA NK+ +L+   
Sbjct: 7   IYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENLQITGAYKIRGAYNKIANLSTEQ 66

Query: 285 VR-GVIAMSAGNHAQGVAYHAQRLGLHALIVMPRFTPGVKIERTRGFGAEVVLHGDTLEE 343
            + GVIA SAGNHAQGVA  A++  + A+IVMP  TP +K+  T+  GAEV+L GD  +E
Sbjct: 67  KQHGVIAASAGNHAQGVAISAKKFSIKAVIVMPESTPLLKVSATKALGAEVILRGDNFDE 126

Query: 344 ARAHAFALAQERGLTFVHPYDDEAIIAGQGTVALEMLDAVPDLDTLVVAI 393
           A A A + A+E  L+F+HP++DE ++AGQGT+ LEMLD + DLD ++  +
Sbjct: 127 AYAFATSYAKENNLSFIHPFEDEFVMAGQGTLMLEMLDEISDLDMIIAPV 176


>DR0567 [E] COG1171 Threonine dehydratase Dra Deinococcus radiodurans
          Length = 568

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 116/171 (67%), Gaps = 2/171 (1%)

Query: 230 ARLQGQILNTPCVESRTLSEIVGAQVFLKFENLQFTSSFKERGACNKLTDLAAAG-VRGV 288
           +++ G    TP   +  LSE  G +V LK E+ Q   SFK RGA NK++ L+A    RGV
Sbjct: 77  SQVYGAATETPLSPAPRLSERSGNRVLLKREDQQPIFSFKLRGAYNKMSQLSAEERARGV 136

Query: 289 IAMSAGNHAQGVAYHAQRLGLHALIVMPRFTPGVKIERTRGFGAEVVLHGDTLEEARAHA 348
           I  SAGNHAQGVA+  ++LG+ A+IVMP  TP +K++  R  GAEV+LHGD+  +A   A
Sbjct: 137 ICASAGNHAQGVAFAGEKLGIPAVIVMPATTPDIKVQACRARGAEVILHGDSFSDAETFA 196

Query: 349 FALAQERGLTFVHPYDDEAIIAGQGTVALEMLDAVPDLDTLV-VAIGGGGL 398
            AL QERGLTFVHPYDD  ++AGQGT+ALE+L  V + D  V V +GGGGL
Sbjct: 197 LALQQERGLTFVHPYDDPLVLAGQGTIALELLRQVEEDDYAVFVPVGGGGL 247


>FN1411 [E] COG1171 Threonine dehydratase Fnu Fusobacterium nucleatum
          Length = 404

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 116/166 (69%), Gaps = 1/166 (0%)

Query: 227 RAAARLQGQILNTPCVESRTLSEIVGAQVFLKFENLQFTSSFKERGACNKLTDLA-AAGV 285
           +A  +L   +L T  + S   S+  G +VF+K ENLQ T SFK RGA NK+++L  A   
Sbjct: 9   KAKEKLSKVLLETQLIYSPIFSKESGNKVFIKPENLQKTGSFKIRGAYNKISNLTDAEKK 68

Query: 286 RGVIAMSAGNHAQGVAYHAQRLGLHALIVMPRFTPGVKIERTRGFGAEVVLHGDTLEEAR 345
           RGVIA SAGNHAQGVAY A+  G+ A+IVMP+ TP +K+E T+ +GAEV+LHGD  ++A 
Sbjct: 69  RGVIASSAGNHAQGVAYGAKESGIKAVIVMPKSTPLIKVESTKQYGAEVILHGDVYDDAF 128

Query: 346 AHAFALAQERGLTFVHPYDDEAIIAGQGTVALEMLDAVPDLDTLVV 391
             A  L ++ G  FVHP++DE ++ GQGT+ALE+L+ +P+ D ++V
Sbjct: 129 KKAKELEEKEGYVFVHPFNDEDVLDGQGTIALEILEELPETDIILV 174