BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0024.p (211 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0479 [E] COG1126 ABC-type polar amino acid transport system, ... 85 1e-16 AF0731 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 79 8e-15 Cgl1972 [V] COG1131 ABC-type multidrug transport system, ATPase ... 75 1e-13 NMB1966 [Q] COG1127 ABC-type transport system involved in resist... 74 2e-13 PA4461 [R] COG1137 ABC-type (unclassified) transport system, ATP... 73 4e-13 >RSp0479 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Rso Ralstonia solanacearum Length = 249 Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 11/192 (5%) Query: 1 MTSPTILQATDLSFSYPDHEVFKNISLALPAG-VTVIRGGDGRGKTSLIRVLAGELKASS 59 M++P ++Q ++ S+ H V K++S A AG V VI G G GK++L+R L + S Sbjct: 1 MSTP-LIQIEHVNKSFGAHHVLKDVSTAFHAGQVAVIVGASGSGKSTLLRTLNRLERHDS 59 Query: 60 GQLAINGVRLDEQAAQY---KQQVYYVDPRTEAFDQLSVPDYFA-----SVKARFPDFDD 111 G++ ++G+ +D+ +++V V + F LSV D + K + +D Sbjct: 60 GRITVDGIEVDDHPRHLEALRREVGMVFQQFNLFSHLSVLDNVTLAPRRTRKIGRKEAND 119 Query: 112 AALPELLEGLSLTPHAEKKLFMLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLDKSSINF 171 A+ ELL + L HA K F LS G +++V +A A A V L D+P ++LD + Sbjct: 120 QAM-ELLRRVGLETHAHKHPFALSGGQQQRVAIARALAMQPRVMLFDEPTSALDPEMVKE 178 Query: 172 VSEVLAGFAEQG 183 V +V+ G A G Sbjct: 179 VLDVMRGLASSG 190 >AF0731 [P] COG1122 ABC-type cobalt transport system, ATPase component Afu Archaeoglobus fulgidus Length = 326 Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 97/189 (51%), Gaps = 12/189 (6%) Query: 5 TILQATDLSFSYPDHEVFKNISLALPAG-VTVIRGGDGRGKTSLIRVLAGELKASSGQLA 63 +++A DL F Y D EV K ++ G VTV+ G +G GKT+L++ L G L+ SG++ Sbjct: 33 VMIEAVDLHFCYGDAEVLKGVNFKAERGKVTVLMGRNGAGKTTLLKHLNGLLRPKSGKVI 92 Query: 64 INGVRLD---EQAAQYKQQVYYVDPRTEAFDQLSVPDYFASVK--ARFPDFDDAALPEL- 117 I+G L + + +++V+YV + DQ+ P + V R L + Sbjct: 93 IDGRELKYDRKSLLEVRKRVFYVFQNPD--DQILSPTVWQDVAFGPRNLGLKGERLERVV 150 Query: 118 ---LEGLSLTPHAEKKLFMLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLDKSSINFVSE 174 LE + L+ + ++ LS G KR++ +A A A ++D+P A++D + ++E Sbjct: 151 RNALEAVGLSGYEKRLCSTLSGGEKRRLAIASALAMNPDYCIMDEPSANVDGEGLRMIAE 210 Query: 175 VLAGFAEQG 183 ++ E+G Sbjct: 211 IIRKLREEG 219 >Cgl1972 [V] COG1131 ABC-type multidrug transport system, ATPase component Cgl Corynebacterium glutamicum Length = 285 Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 8/189 (4%) Query: 2 TSPTI--LQATDLSFSYPDHEVFKNISLALPAG-VTVIRGGDGRGKTSLIRVLAGELKAS 58 T PT L L+ SY D V NI+L +P G + I G +G GKT+++ + G L+ + Sbjct: 16 TDPTTQALAVRGLTKSYGDATVVNNINLDIPKGAIYGIVGPNGAGKTTMLSMATGLLRPN 75 Query: 59 SGQLAINGVRLDEQAAQYKQQVYYVDPRTEAFDQLSVPDYFASVKARFPDFDDAAL---- 114 G I+G + E+ K+ + + FD+L+ + V A + D+ + Sbjct: 76 KGTAWISGFNVWEEPNDAKRSMGLLADGLPIFDRLTGKELLTYVGA-LRELDEGIVDQRS 134 Query: 115 PELLEGLSLTPHAEKKLFMLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLDKSSINFVSE 174 ELLE L L A K++ S G +K+ LA A V +LD+P ++D S + + Sbjct: 135 EELLEALGLKEAAGKRVVDYSAGMTKKILLAQALIHNPKVLILDEPLEAVDPVSGRLIQQ 194 Query: 175 VLAGFAEQG 183 +L FA+ G Sbjct: 195 ILKNFAQTG 203 >NMB1966 [Q] COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component Nme Neisseria meningitidis MC58 Length = 266 Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 20/220 (9%) Query: 1 MTSPTILQATDLSFSYPDHEVFKNISLALPAG-VTVIRGGDGRGKTSLIRVLAGELKASS 59 M+ ++ D++F+Y D + KNI+ ++P G + GG G GKT+L+R++ G+++ S Sbjct: 1 MSPSPFIEMKDVAFAYGDRPILKNINFSIPQGNFAAVMGGSGSGKTTLMRLITGQIRPQS 60 Query: 60 GQLAINGVRL----DEQAAQYKQQVYYVDPRTEAFDQLSVPDYFASVKARFPDFDDAALP 115 GQ+ I G L ++ ++++++ + F LSV D A FP + LP Sbjct: 61 GQVLIEGRDLAGFSADELYEHRRRMGVLFQHGALFTDLSVFDNIA-----FPMRELTRLP 115 Query: 116 E-------LLEGLSLTPHAEKKLF--MLSTGSKRKVYLAGAFAAGAAVNLLDDPFASLDK 166 E LL+ ++ + L LS G R+V LA A + L D+PF LD Sbjct: 116 EAVIRDLVLLKLNAVGLRGVENLMPSELSGGMSRRVALARTIALDPEIMLYDEPFTGLDP 175 Query: 167 SSINFVSEVLAGFAEQGDQSPQVWVASFYETPAEIAAREI 206 S+ ++ +++ + +S + V E EI + I Sbjct: 176 ISLGVIAHLISR-VNKALRSTSIMVTHDIEKSLEIVDQVI 214 >PA4461 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Pae Pseudomonas aeruginosa Length = 241 Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 17/189 (8%) Query: 7 LQATDLSFSYPDHEVFKNISLALPAGVTV-IRGGDGRGKTSLIRVLAGELKASSGQLAIN 65 L+A L+ SY +V +++S+++ +G V + G +G GKT+ ++ G ++A G Sbjct: 4 LKAQHLAKSYKGRQVVRDVSMSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQADQGV---- 59 Query: 66 GVRLDEQAAQY-------KQQVYYVDPRTEAFDQLSVPDYFASVKARFPDFDDAALPELL 118 VR+DEQ + + + Y+ F +LSV D ++ D D E L Sbjct: 60 -VRIDEQNVTHLPMHGRARAGIGYLPQEASIFRKLSVSDNIMAILETRSDLDRNGRKEAL 118 Query: 119 EGLS---LTPHAEKKLFM-LSTGSKRKVYLAGAFAAGAAVNLLDDPFASLDKSSINFVSE 174 EGL H L M LS G +R+V +A A A+ LLD+PFA +D S+ + + Sbjct: 119 EGLLQEFHIHHIRDNLGMSLSGGERRRVEIARALASAPKFILLDEPFAGVDPISVGDIKQ 178 Query: 175 VLAGFAEQG 183 ++ +G Sbjct: 179 IIHHLKAKG 187