BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0072.p (251 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc1580 [M] COG3967 Short-chain dehydrogenase involved in D-alan... 244 2e-64 SMb21384 Non COG 221 1e-57 BS_dltE [M] COG3967 Short-chain dehydrogenase involved in D-alan... 152 1e-36 L144410 [M] COG3967 Short-chain dehydrogenase involved in D-alan... 135 9e-32 CAC0536 [M] COG3967 Short-chain dehydrogenase involved in D-alan... 132 7e-31 >AGc1580 [M] COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 252 Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/248 (50%), Positives = 170/248 (68%), Gaps = 3/248 (1%) Query: 1 MKTTGNTILITGSTAGIGLGLALRFHQAGNKVIIAGRRKALLQQITTDHPGIEAIELDVA 60 MK TGNTILITG +GIG LA FHQAGN+VII+GRR+A+L ++T +PG+ ++ +D Sbjct: 1 MKITGNTILITGGGSGIGRALAEAFHQAGNRVIISGRRQAVLDEVTAANPGMASMVMDAG 60 Query: 61 DAKSIVQASEFVAERYPDLNVVINNAGIMLSESV-LTPDSLKGAEETVTTNLLGTIRMTY 119 DA+ I +E + + +P LN VINNAGIM E + PD L AEET+ TNLL IR+T Sbjct: 61 DAEGIRAFAEALVKAHPTLNAVINNAGIMRPEEIAAAPDYLDTAEETIATNLLAPIRLTA 120 Query: 120 AFLPQLARKNDSVIINVSSALAFVPFPIAMTYSATKAAVHSFTEGLRVQLADTPVRVIEL 179 A LP ++ + ++ VSS LAFVP + TYSATK+A+H+++ LR QL +T V VIE+ Sbjct: 121 ALLPHFLKQPAATVLTVSSGLAFVPMVLTPTYSATKSAIHAYSVALREQLKETSVEVIEI 180 Query: 180 APPGVRTTLF--GQESDEQAMPLEEFLDEALSLLHSEPAPKEVIVERAKFLRTAEATGNY 237 PP V+TTL GQ +DE+AMPLE F+ E + +L + P KEV+VER K LR A GN+ Sbjct: 181 VPPYVQTTLMGEGQANDERAMPLEAFISEVMDILKNRPDEKEVVVERCKPLRFAAQNGNF 240 Query: 238 DNMLGMLS 245 D + M++ Sbjct: 241 DQVFAMIN 248 >SMb21384 Non COG Length = 247 Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 120/247 (48%), Positives = 159/247 (64%), Gaps = 2/247 (0%) Query: 1 MKTTGNTILITGSTAGIGLGLALRFHQAGNKVIIAGRRKALLQQITTDHPGIEAIELDVA 60 MKTTGNTILITG +GIG LA RF+ GN VI+AGRR L++ + A+ +DV Sbjct: 1 MKTTGNTILITGGGSGIGRKLAQRFNALGNTVIVAGRRMETLEETIAGRQDMYAVAVDVD 60 Query: 61 DAKSIVQASEFVAERYPDLNVVINNAGIMLSESVLTPDSLKGAEETVTTNLLGTIRMTYA 120 D I + + V +P LNV++NNAGIM E + L+ AE+T+TTNLL IR+T Sbjct: 61 DRDHIREFAGRVLTEHPALNVLVNNAGIMRREDLSGKRDLRDAEQTITTNLLAPIRLTNE 120 Query: 121 FLPQLARKNDSVIINVSSALAFVPFPIAMTYSATKAAVHSFTEGLRVQLADTPVRVIELA 180 + L R++++ I+NVSS LAFVP TY+ATKAA+HS+T LR QL V VIELA Sbjct: 121 LIDHLIRQSEATIVNVSSGLAFVPMSSTPTYNATKAAIHSYTVSLREQLKG-KVEVIELA 179 Query: 181 PPGVRTTLF-GQESDEQAMPLEEFLDEALSLLHSEPAPKEVIVERAKFLRTAEATGNYDN 239 PP V+T L GQ + E MPL F+DE ++L +P P+E++VER FLR AE GN+D Sbjct: 180 PPAVQTELTPGQSTREGYMPLAAFIDETMTLFLQQPTPREILVERVGFLRWAERNGNFDK 239 Query: 240 MLGMLSA 246 + ML + Sbjct: 240 AVEMLGS 246 >BS_dltE [M] COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Bsu Bacillus subtilis Length = 252 Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 96/256 (37%), Positives = 136/256 (53%), Gaps = 19/256 (7%) Query: 1 MKTTGNTILITGSTAGIGLGLALRFHQAGNKVIIAGRRKALLQQITTDHPGIEAIELDVA 60 MK T NT+LITG +AGIGL LA R + GN+VII GR +A L + P I + DVA Sbjct: 1 MKMTNNTVLITGGSAGIGLELAKRLLELGNEVIICGRSEARLAEAKQQLPNIHTKQCDVA 60 Query: 61 DAKSIVQASEFVAERYPDLNVVINNAGIMLSESVLTPDSLKGAEE------TVTTNLLGT 114 D E+ + YP+LNV++NNAGI D KG EE + N Sbjct: 61 DRSQREALYEWALKEYPNLNVLVNNAGIQKE-----IDFKKGTEELFVDGDEIELNFQAP 115 Query: 115 IRMTYAFLPQLARKNDSVIINVSSALAFVPFPIAMTYSATKAAVHSFTEGLRVQLADTPV 174 + ++ F P L ++ ++ I+ V+S LAF P + Y ATKAA+HSF+ LR + DT V Sbjct: 116 VHLSALFTPHLMKQPEAAIVQVTSGLAFNPLAVYPVYCATKAALHSFSLTLRHHVRDTSV 175 Query: 175 RVIELAPPGVRTTLFGQESDEQAMPL-----EEFLDEALSLLHSEPAPKEVIVERAKFLR 229 VIE+APP V T L + D+Q + EE++ L L + +E+ ER + LR Sbjct: 176 EVIEMAPPMVDTGLNQKSRDKQGLTYRGISSEEYVQYFLDGL--KEGKQEITNERVEGLR 233 Query: 230 TAEATGNYDNMLGMLS 245 A +YD + ++ Sbjct: 234 DA-TRADYDRLFEQMN 248 >L144410 [M] COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Lla Lactococcus lactis Length = 261 Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 8/220 (3%) Query: 1 MKTTGNTILITGSTAGIGLGLALRFHQAGNKVIIAGRRKALLQQITTDHPGIEAIELDVA 60 M TG+TILITG T+GIGLG A +F + GNKVII R + L QI ++ DVA Sbjct: 1 MTFTGHTILITGGTSGIGLGFAKKFSELGNKVIITARNEKRLNQILNENLTFTGFVSDVA 60 Query: 61 DAKSIVQASEFVAERYPDLNVVINNAGIMLSESVL--TPDSLKGAEETVTTNLLGTIRMT 118 D S+ Q F+ E +P L+V++N AGIM + ++ +SLK E + NLLGTI +T Sbjct: 61 DKDSLPQLVNFIKENFPQLDVIMNCAGIMRAINLFEQADNSLKVLTEEIHINLLGTIAVT 120 Query: 119 YAFLPQLARKNDSVIINVSSALAFVPFPIAMTYSATKAAVHSFTEGLRVQ--LADTPVRV 176 AFL L N+ ++INVSS L+ + Y+ TKA VH +++ LR Q + ++V Sbjct: 121 QAFLKILV-ANNGLVINVSSGLSNLADGAHPIYNLTKAGVHFYSDALREQAKYFEKTLKV 179 Query: 177 IELAPPGVRTTLFGQESDEQA---MPLEEFLDEALSLLHS 213 IEL PP V T ++ A M L + + E L+ L + Sbjct: 180 IELVPPLVTETNLESHTNTDAPNNMALSDLISETLAGLEN 219 >CAC0536 [M] COG3967 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) Cac Clostridium acetobutylicum Length = 252 Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/196 (42%), Positives = 110/196 (56%), Gaps = 13/196 (6%) Query: 1 MKTTGNTILITGSTAGIGLGLALRFHQAGNKVIIAGRRKALLQQITTDHPGIEAIELDVA 60 M TGNTILITG GIGL L +F + GN+VII GRR++ L++ P I I DVA Sbjct: 1 MNLTGNTILITGGATGIGLELTKQFVELGNEVIICGRRESRLKEAKKAIPSIHTIVCDVA 60 Query: 61 DAKSIVQASEFVAERYPDLNVVINNAGIMLSESVLTPDSLKGAEETVTTNLL-------G 113 ++S + + + Y ++N++INNAG + + V D KG E+ V NL+ Sbjct: 61 SSQSREELMNEIKKNYSNINILINNAG--MQQDV---DLTKGIEDLVKDNLIEVDINLKA 115 Query: 114 TIRMTYAFLPQLA-RKNDSVIINVSSALAFVPFPIAMTYSATKAAVHSFTEGLRVQLADT 172 I + F+ RK S IINVSS L FVP Y ATKAA+HS+T LR QL D Sbjct: 116 PIYLAGMFVEHFKERKLKSTIINVSSGLGFVPMARVPIYCATKAAMHSYTLSLRHQLKDL 175 Query: 173 PVRVIELAPPGVRTTL 188 + VIE+ PP V + L Sbjct: 176 GIEVIEVVPPAVVSEL 191