BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0063.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0437 [R] COG2391 Predicted transporter component Rso Ralstoni...   177   4e-45
VCA0640 [R] COG2391 Predicted transporter component Vch Vibrio c...   115   3e-26
BMEII0808 [R] COG2391 Predicted transporter component Bme Brucel...   115   4e-26
SMa1052 [R] COG2391 Predicted transporter component Sme Sinorhiz...   114   9e-26
XF0765 [R] COG2391 Predicted transporter component Xfa Xylella f...   111   5e-25

>RSc0437 [R] COG2391 Predicted transporter component Rso Ralstonia
           solanacearum
          Length = 137

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/137 (70%), Positives = 112/137 (81%)

Query: 1   MATVSALFAGLLFGLGLMVSGMADPAKVLGFLDLFGLWNPSLIFVMMGAILLGAPAFFLA 60
           MA + A  AGLLFG GLMVS MA PAKVLGFLDL G W+PSL FVM GAIL+GA AFF+A
Sbjct: 1   MAVLIAWAAGLLFGAGLMVSCMASPAKVLGFLDLAGRWDPSLAFVMAGAILVGAIAFFIA 60

Query: 61  RRRRRSILGLPMQIPAAASLTVRLIAGSAVFGIGWGLAGFCPGPALVSAAAGYPKAIGFV 120
           RRR RS+LGLP+++PA A++T RL+ GSA FGIGWGLAGFCPGPALV+  AG PKA GFV
Sbjct: 61  RRRGRSLLGLPVRLPAGAAITARLVLGSAAFGIGWGLAGFCPGPALVALGAGAPKAWGFV 120

Query: 121 AAMIAGMLLFDQLERLR 137
           AAM+AGM +F  +ER R
Sbjct: 121 AAMLAGMAVFSAMERRR 137


>VCA0640 [R] COG2391 Predicted transporter component Vch Vibrio cholerae
          Length = 154

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 89/136 (65%), Gaps = 1/136 (0%)

Query: 5   SALFAGLLFGLGLMVSGMADPAKVLGFLDLFGLWNPSLIFVMMGAILLGAPA-FFLARRR 63
           ++L AGLLFGLG++VSGMADPAKV+GFLD+ G W+PSL+FVM GA+ +  PA FFL + +
Sbjct: 11  TSLVAGLLFGLGMVVSGMADPAKVIGFLDVAGTWDPSLMFVMGGALAIFMPAYFFLIKPK 70

Query: 64  RRSILGLPMQIPAAASLTVRLIAGSAVFGIGWGLAGFCPGPALVSAAAGYPKAIGFVAAM 123
            + +      +     +  RLI+GS +FG+GWGL G CPGP + S A G   A  F  AM
Sbjct: 71  AKPVNAEVFCLANNTKIDRRLISGSVIFGLGWGLVGICPGPVVSSLALGNLGAWVFFPAM 130

Query: 124 IAGMLLFDQLERLRRR 139
           + G+   + L  +R R
Sbjct: 131 MVGLGTTNLLICIRNR 146


>BMEII0808 [R] COG2391 Predicted transporter component Bme Brucella melitensis
          Length = 218

 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 1/129 (0%)

Query: 5   SALFAGLLFGLGLMVSGMADPAKVLGFLDL-FGLWNPSLIFVMMGAILLGAPAFFLARRR 63
           +AL AG++FG GL +SGM +PA+V+GFL++  G W+PSL FVM G +L+  P   L RR 
Sbjct: 84  AALAAGVIFGFGLSLSGMINPARVIGFLNIASGHWDPSLAFVMGGGLLVTIPGIALCRRL 143

Query: 64  RRSILGLPMQIPAAASLTVRLIAGSAVFGIGWGLAGFCPGPALVSAAAGYPKAIGFVAAM 123
                     +P    +  RLIAGSA+FGIGWGL GFCPGPA+ + + G P+   FV AM
Sbjct: 144 SAPAFDTAFHLPTKTQIDRRLIAGSALFGIGWGLGGFCPGPAVAALSLGLPQVALFVLAM 203

Query: 124 IAGMLLFDQ 132
             GM++ D+
Sbjct: 204 AVGMIIHDR 212


>SMa1052 [R] COG2391 Predicted transporter component Sme Sinorhizobium
           meliloti
          Length = 143

 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 84/129 (65%)

Query: 5   SALFAGLLFGLGLMVSGMADPAKVLGFLDLFGLWNPSLIFVMMGAILLGAPAFFLARRRR 64
           +AL +G++FG GL +SGM +PA+V GFL++FG W+PSL FV+ GA+++      + +  R
Sbjct: 10  AALASGIVFGFGLSLSGMLNPARVQGFLEVFGTWDPSLAFVLGGAVVVAFIGVQVMKLMR 69

Query: 65  RSILGLPMQIPAAASLTVRLIAGSAVFGIGWGLAGFCPGPALVSAAAGYPKAIGFVAAMI 124
                    +P    +   L+ GSAVFG+GWG+ GFCPGPA+ S A G P+ + FV AM+
Sbjct: 70  HPAFDDTFHVPTIRRIDAPLVIGSAVFGLGWGIGGFCPGPAVASLALGLPQTVLFVVAML 129

Query: 125 AGMLLFDQL 133
            GM L D+L
Sbjct: 130 VGMTLHDRL 138


>XF0765 [R] COG2391 Predicted transporter component Xfa Xylella fastidiosa
           9a5c
          Length = 146

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 84/129 (65%), Gaps = 1/129 (0%)

Query: 6   ALFAGLLFGLGLMVSGMADPAKVLGFLDL-FGLWNPSLIFVMMGAILLGAPAFFLARRRR 64
           AL AGLLFG GL +S M +P +VL FL++  G WNPSL+FV+  A+ +  P   L RR +
Sbjct: 12  ALAAGLLFGFGLALSEMINPIRVLSFLNVASGHWNPSLLFVLGSALAVAFPGMALQRRLK 71

Query: 65  RSILGLPMQIPAAASLTVRLIAGSAVFGIGWGLAGFCPGPALVSAAAGYPKAIGFVAAMI 124
           R +L     +P+   +  R++ GSA+FG GWGL G CPGPA+ S + G    + FVAAM 
Sbjct: 72  RPLLDECFHLPSKKVIDRRIVFGSAIFGTGWGLTGLCPGPAIASLSTGLGPVLLFVAAMA 131

Query: 125 AGMLLFDQL 133
           AGM++ D++
Sbjct: 132 AGMIIHDRI 140