BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0032.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll3992 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ...    84   7e-17
PA5304 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) P...    80   1e-15
AGl3050 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ...    79   3e-15
BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating...    76   2e-14
NMB0176 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ...    75   3e-14

>mll3992 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Mlo
           Mesorhizobium loti
          Length = 418

 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +GGG+ GVTTAY+LA AG EV VL+R+   A E +F N+G ++P    P   P I   A 
Sbjct: 6   LGGGVIGVTTAYYLAEAGHEVTVLDRQKGPALETSFANAGEISPGYASPWAGPGIPLKAI 65

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREY-QDYFSLNKQRLTRLSAYGXRLLQ 114
             L     P++V+  F+P  W W+ K  R    + +++NK R+  L+ Y    L+
Sbjct: 66  KWLLMKHGPLVVRPAFDPHMWTWLVKMLRNCTTERYAINKSRMVPLAEYSRDTLK 120


>PA5304 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Pae
           Pseudomonas aeruginosa
          Length = 432

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +G G+ G  +AY+LARAGFEV V++R+   A E +F N+G ++P    P   P I   A 
Sbjct: 6   LGSGVIGTASAYYLARAGFEVVVVDRQDGPALETSFANAGQVSPGYASPWAAPGIPLKAM 65

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREYQ-DYFSLNKQRLTRLSAYGXRLLQ 114
             L +   P+ +K   +PS++ W+ +  R    + +++NK+R+ RLS Y    L 
Sbjct: 66  KWLLEKHAPLAIKLTSDPSQYAWMLQMLRNCTAERYAVNKERMVRLSEYSRDCLD 120


>AGl3050 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 418

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 1/114 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +G G+ GVT+A++LA+AG +V V++R+   A E +F N+G ++P    P   P I   A 
Sbjct: 6   LGAGVVGVTSAWYLAKAGHKVTVIDRQPAAALETSFANAGEVSPGYSSPWAAPGIPMKAM 65

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREYQD-YFSLNKQRLTRLSAYGXRLL 113
             LF    P++++   +P+ WRW+ +  R      +++NK R+ R++ Y    L
Sbjct: 66  KWLFMKHAPLIIRPTADPAAWRWMSQMLRNCTSARYAINKSRMVRVAEYSRDCL 119


>BMEII0373 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Bme
           Brucella melitensis
          Length = 416

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 1/114 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +G G+ GVTTAY+LA+ G EV V++R    A E +F N+G ++P    P   P I   A 
Sbjct: 6   LGSGVIGVTTAYYLAKLGHEVTVIDREEGPALETSFANAGQVSPGYASPWAAPGIPLKAA 65

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREYQDY-FSLNKQRLTRLSAYGXRLL 113
             LF+   P++++   +P ++RW+ +      D  + +NK R+ R++ Y    L
Sbjct: 66  KWLFQKHAPLILRLTTDPVQYRWLLQMLANCTDSRYKINKTRMVRVAEYSRDCL 119


>NMB0176 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Nme
           Neisseria meningitidis MC58
          Length = 418

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 1   VGGGLSGVTTAYFLARAGFEVAVLERRANVAEEATFGNSGLLAPSVVQPLVLPAITRTAF 60
           +G G++GV++A++LA AG EV V++R   VA E +F N+G L+     P   P I   A 
Sbjct: 6   LGAGVAGVSSAWYLAEAGHEVTVIDRAEGVAMETSFANAGQLSYGYTTPWAAPGIPTKAL 65

Query: 61  SNLFKSEPPILVKSGFNPSRWRWVRKSRREYQ-DYFSLNKQRLTRLSAYGXRLLQR 115
             LFKS PP+L +   +  +  W+ +  +     ++  NK+R+ R+S Y   + +R
Sbjct: 66  KWLFKSHPPLLFRPDGSLYQIEWLWQMLQNCTAAHYQTNKERMVRISEYSREMFRR 121