BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0018.p (358 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport... 345 1e-94 mlr5222 Non COG 306 4e-83 APE1304 [E] COG4177 ABC-type branched-chain amino acid transport... 195 1e-49 RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport... 124 3e-28 AF0824 [E] COG4177 ABC-type branched-chain amino acid transport ... 124 5e-28 >AGpA778 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 364 Score = 345 bits (885), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 181/324 (55%), Positives = 237/324 (73%), Gaps = 3/324 (0%) Query: 26 RIGMAILLAIAFVGIPLIGSEYWFSAILIPFLVFALAALGLNILTGYAGQLSLGSAAFMA 85 R G ++LAIA++ +P +G+ Y F AIL+PFL +LA +GLN+LTGYAGQ+SLGSAAFMA Sbjct: 17 RAGTVVVLAIAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSAAFMA 76 Query: 86 VGAYAAYNFQLRIEGIPIVLSFILAGGCAALVGIVFGLPSLRIKGFYLAVATLAAQFFVV 145 VGA+AAYNF LR++G+P+ +S +LAG AA++GIVFGLPSLR++GFYLAV+TLAAQFFV Sbjct: 77 VGAFAAYNFDLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQFFVQ 136 Query: 146 WALTKFSWFSNNSSSGVISTQKIDFFGIAINSPVKKYLFVLGIVCVMAMLAKNLVRSSTG 205 WALTKFSW SN S+SGVI + GI+ PV +YLF L V + LA LV S TG Sbjct: 137 WALTKFSWLSNESASGVIDAPALSLAGISFEGPVGRYLFALTTVTALTFLAYRLVSSQTG 196 Query: 206 RAWMAVRDMDVAAEVIGIQLMRTKLLAFAVSSFFCGVAGALYAFCYLGSVEPDGFSLDLS 265 R ++AVRD + AA +IG+ ++RTKLLAFA+SSF GVAG ++AF YL +VEP GF+LD S Sbjct: 197 RNFIAVRDNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFNLDRS 256 Query: 266 FRILFMIIIGGVGSILGAFLGSAFILLLPIFLDNVLPPLASLLHLPFTNATVSHIQLMLF 325 F+ILF++IIGG+ SI GAF G+A I++ P+ L + L + F + + Q ++ Sbjct: 257 FQILFIVIIGGLASIRGAFFGAALIVVFPLVLSRLGSLLLGDV---FDSGVLDMTQRIVI 313 Query: 326 GGLIIFFLIVEPHGLARLWQITKE 349 G LII FLI+EP GL LW K Sbjct: 314 GALIILFLILEPDGLVSLWDRLKS 337 >mlr5222 Non COG Length = 346 Score = 306 bits (785), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 237/321 (73%), Gaps = 3/321 (0%) Query: 31 ILLAIAFVGIPLIGSEYWFSAILIPFLVFALAALGLNILTGYAGQLSLGSAAFMAVGAYA 90 +LLA A+ +PLIGS Y F AIL+PFL LA +GLNILTGYAGQ+SLGSAAFMA GA+A Sbjct: 22 LLLAFAYGIVPLIGSSYLFEAILLPFLALGLAGVGLNILTGYAGQVSLGSAAFMAAGAFA 81 Query: 91 AYNFQLRIEGIPIVLSFILAGGCAALVGIVFGLPSLRIKGFYLAVATLAAQFFVVWALTK 150 AYNF LR+EG+P++ S +LAG AA +GIVFGLPSLR+KGFYLAV+TLAAQFFV WALTK Sbjct: 82 AYNFNLRVEGLPLIGSIVLAGIVAAAIGIVFGLPSLRLKGFYLAVSTLAAQFFVQWALTK 141 Query: 151 FSWFSNNSSSGVISTQKIDFFGIAINSPVKKYLFVLGIVCVMAMLAKNLVRSSTGRAWMA 210 FSWFSNNS+SGVI ++ G+A++ V +YLF L V ++ LA LV S TGR ++A Sbjct: 142 FSWFSNNSASGVIDAPRLSIGGLALDGAVGRYLFALTTVALLTFLAHRLVTSQTGRNFIA 201 Query: 211 VRDMDVAAEVIGIQLMRTKLLAFAVSSFFCGVAGALYAFCYLGSVEPDGFSLDLSFRILF 270 +RD + AA +IGI +++TKLLAFA+SSF GVAG ++AF YL +VEP GF LD SF+ILF Sbjct: 202 IRDNETAARIIGIPVLKTKLLAFAISSFIIGVAGVIWAFAYLRTVEPAGFDLDRSFQILF 261 Query: 271 MIIIGGVGSILGAFLGSAFILLLPIFLDNVLPPLASLLHLPFTNATVSHIQLMLFGGLII 330 +IIIGG+ SI GAF G+A I++ P+ L + LL F + + Q ++ G LII Sbjct: 262 IIIIGGLASIRGAFFGAALIVVFPLGLSRL---GGFLLGDVFDSGVLDMSQRIVLGALII 318 Query: 331 FFLIVEPHGLARLWQITKEKL 351 FLI+EP GL LW + +L Sbjct: 319 LFLILEPDGLVALWDRVRRRL 339 >APE1304 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ape Aeropyrum pernix Length = 349 Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 137/356 (38%), Positives = 200/356 (56%), Gaps = 16/356 (4%) Query: 6 AGQFKTSYIADSQIF--PIRQDRIGMAILLAIAFVGIPLIGSEYWFSAILIPFLVFALAA 63 AG FK SY AD IF PI IL +A V P + +Y+ + +L+ ++F +AA Sbjct: 7 AGVFKESYEADMAIFRYPIHWA---ALILAVVAAVAAPFVIGKYYLN-LLVVMMIFWIAA 62 Query: 64 LGLNILTGYAGQLSLGSAAFMAVGAYAAYNFQLRIEGIPIVLSFILAGGCAALVGIVFGL 123 +GLNI G AGQ+SL AA M +GAY N L + G+ V +AG AAL+GI+ L Sbjct: 63 IGLNITLGLAGQISLAHAALMGIGAYTVANAALHL-GVNSVAILPIAGLAAALLGIILSL 121 Query: 124 PSLRIKGFYLAVATLAAQFFVVWALTKFSWFSNNSSSGVISTQKIDFFGIAINSPVKKYL 183 PS R+K +YLA+A+LAAQ + + ++ + + + GI++ P Y Sbjct: 122 PSFRLKEYYLAMASLAAQLILEYVYSRI----DPDQYTPVPPETKTLLGISLTEPTALYY 177 Query: 184 FVLGIVCVMAMLAKNLVRSSTGRAWMAVRDMDVAAEVIGIQLMRTKLLAFAVSSFFCGVA 243 F+L I VMA+ A N+ RSS GRA AVRD DVA+E IGI + K AFA+ F+ GVA Sbjct: 178 FILAITVVMALAAANIGRSSLGRAMKAVRDNDVASEAIGINVQLVKATAFAIGGFYAGVA 237 Query: 244 GALYAFCYLGSVEPDGFSLDLSFRILFMIIIGGVGSIL-GAFLGSAFILLLPIFLDNVLP 302 G LYA Y + +GF+L S +L M++IGG G ++ G+ LG + +++ + Sbjct: 238 GGLYA-IYSSGIGWEGFTLVNSIELLGMVLIGGPGRVVWGSLLGVLVMRTGWTMMESTIT 296 Query: 303 PLASLLHLPFTNATVSHIQLMLFGGLIIFFLIVEPHGLARLWQITKEKLRLWPFPH 358 PL + + L ++ +I L G LI+ F+I EP GL + + KE RLWP+ + Sbjct: 297 PLLAGIGLSIIASSAKYIVL---GFLIVAFIIAEPEGLIAVLRRVKEYFRLWPYSY 349 >RSc2439 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 378 Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 113/349 (32%), Positives = 171/349 (48%), Gaps = 56/349 (16%) Query: 43 IGSEYWFSAILIPFLVFALAALGLNILTGYAGQLSLGSAAFMAVGAYA------------ 90 +G YW +L L++ + ALGLNI+ G+AG L LG AF AVGAY Sbjct: 35 VGGNYWVR-VLDFALLYIMLALGLNIVVGFAGLLDLGYIAFYAVGAYMMALLGSPHLTNQ 93 Query: 91 -AYNFQLRIEGIPIVLSFI--LAGGCAALVGIVFGLPSLRIKGFYLAVATLAAQFFVVWA 147 + QL G+ +++ ++ L G AAL GI+ G P+L+++G YLA+ TL + Sbjct: 94 FEWIHQLFPNGLHLLIWWVIPLGAGLAALFGILLGAPTLKLRGDYLAIVTLGFGEIIRIF 153 Query: 148 LTKFSWFSN--NSSSGVISTQKIDFFGIAIN----------SPVKKY--LFVL---GIVC 190 + N N GV + + FG + PV Y LFVL GI+ Sbjct: 154 MNNLDRPVNITNGPKGVNLIEPVKLFGFDFSKRHDIFGIHFEPVHMYYYLFVLLAMGIIT 213 Query: 191 VMAMLAKNLVRSSTGRAWMAVRDMDVAAEVIGIQLMRTKLLAFAVSSFFCGVAGALYAFC 250 V L S GRAW+A+R+ ++AA+ +GI KLLAFA+ + F GV+GA++A Sbjct: 214 VCLRLQN----SRIGRAWVAIREDEIAAKAMGINTRNIKLLAFAMGASFGGVSGAMFA-S 268 Query: 251 YLGSVEPDGFSLDLSFRILFMIIIGGVGSILGAFLGSAFILLLPIFLDNVLPPLASLLHL 310 + G V P+ F L S IL ++++GG+G I G LG +L + +L LA Sbjct: 269 FQGFVSPESFVLWESIYILAIVVLGGMGHIPGVILGG----ILLVGFQELLRALAE---- 320 Query: 311 PFTNATVSHI-------QLMLFGGLIIFFLIVEPHGLARLWQITKEKLR 352 P N H+ + +LFG ++ ++ P G LW +++ R Sbjct: 321 PIQNKLFGHVIVEAEVLRQLLFGLAMVGVMLYRPAG---LWPSPRKEDR 366 >AF0824 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 323 Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 141/257 (54%), Gaps = 7/257 (2%) Query: 40 IPLIGSEYWFSAILIPFLVFALAALGLNILTGYAGQLSLGSAAFMAVGAYAAYNFQLRIE 99 +PL GS Y I F+++ +AA+GLNI+ GY GQ SL AF +GAY + L + Sbjct: 17 LPLTGSSYALR-ISTLFIIYTIAAMGLNIIIGYTGQASLAQGAFYGLGAYVSA--LLVLN 73 Query: 100 GIPIVLSFILAGGCAALVGIVFGLPSLRIKGFYLAVATLAAQFFVVWALTKFSWFSNNSS 159 G S I+A A V + GL +LR+KG Y A+ATL + + K+ + Sbjct: 74 GWSFWASVIVAIAFVAFVAFLIGLMTLRLKGAYFAIATLLFNVIIYEVVDKWDEVTRGPR 133 Query: 160 SGV-ISTQKIDFFGIAIN--SPVKKYLFVLGIVCVMAMLAKNLVRSSTGRAWMAVRDMDV 216 I + I+ GI+I+ Y +L ++ VM +L ++RSS G +A+R+ ++ Sbjct: 134 GLFGIPSPSIELSGISISFSGTYNFYYLMLAVLIVMTLLYWLIIRSSFGSIIVAIRENEL 193 Query: 217 AAEVIGIQLMRTKLLAFAVSSFFCGVAGALYAFCYLGSVEPDGFSLDLSFRILFMIIIGG 276 AE G+ L + K+ +F +S+ F VAGA Y+ Y+GS+ PD S SF L II GG Sbjct: 194 LAEYAGVNLTKFKVASFVLSAIFAAVAGAFYS-AYIGSIFPDITSFVNSFAFLTAIIFGG 252 Query: 277 VGSILGAFLGSAFILLL 293 G++LG F+G+A + L+ Sbjct: 253 AGTMLGPFIGTAVVTLI 269