BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0028.0014.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0805 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 93 5e-19 PA0275 [T] COG0664 cAMP-binding proteins - catabolite gene activ... 89 1e-17 SMc02175 [T] COG0664 cAMP-binding proteins - catabolite gene act... 73 7e-13 alr0295 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 65 2e-10 SMa1067 [T] COG0664 cAMP-binding proteins - catabolite gene acti... 64 2e-10 >RSp0805 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Rso Ralstonia solanacearum Length = 239 Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 2/220 (0%) Query: 10 QDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSVS 69 ++ L S W AL + + + R++ G + +GDP V EG +++ + S Sbjct: 17 RERLHASSWFGALGTPLQDALIGMAVVRRLGGGDMLFRRGDPSDGLYCVVEGAIRIGATS 76 Query: 70 PEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPFNR 129 EG+ A + W GE +L + R +D A + LL+MP+A + LLD++ R Sbjct: 77 AEGRESLLAVLEPVNWFGEIGVLDRQARTHDARADDGALLLHMPQAPLVALLDSAPASLR 136 Query: 130 FLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPY--LNPGIGLELQISQEEVGN 187 L +L L +++E +L RVAR L + + Y L G L++ QE++ Sbjct: 137 AFALLLTHKLRLTFTVLEETALLPTAERVARRLLLMADGYGDLRLGTRRVLRVPQEQLAL 196 Query: 188 LSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 L SRQ NQ L+ E GLL++ YG I +LD GLR Sbjct: 197 LLALSRQTVNQVLKDFEARGLLRLAYGEIELLDFAGLRAL 236 >PA0275 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Pae Pseudomonas aeruginosa Length = 228 Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 8/226 (3%) Query: 4 TSKTTIQDMLGKSIWARALTSEQLERVQSEIFS----RKIPAGGFVCHKGDPVSHWIGVH 59 +T + L W + L E +Q+ + + R++P G + +GD V Sbjct: 2 NERTDYRSQLQAGRWFQGLP----EALQTHLLALAQPRQLPPGQRLFARGDAPCGLYCVV 57 Query: 60 EGLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLW 119 EG +++S+VS GK + W GE +L + R +D A ++LL +P+A L Sbjct: 58 EGAIRISAVSENGKEALLILVEAPHWFGEIALFDGQARTHDAYAEGHTQLLQVPQAALLE 117 Query: 120 LLDNSIPFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQ 179 LL + R + ++ +L L +E +L R+AR L L Y N L Sbjct: 118 LLRREPHYWRDVALLMSHKLRLAFIALEEMALLPAAQRLARRLLMLAEGYDNSRSRQVLH 177 Query: 180 ISQEEVGNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLR 225 + QE++ + SRQ NQ L+ LE G+L++ YG I ILDL GLR Sbjct: 178 LPQEQLALMLSLSRQTTNQILKDLEAQGILQLSYGGIEILDLAGLR 223 >SMc02175 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Sme Sinorhizobium meliloti Length = 234 Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 12/188 (6%) Query: 37 RKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLKDEP 96 RK AG + +GD + I V G +K+S +P+G+ + G GE +LL +P Sbjct: 35 RKWSAGTVIFQRGDQGDYMIVVVSGRIKLSLFTPQGRELMLRQHEAGALFGEMALLDGQP 94 Query: 97 RKYDVVALRDSELLYMPKATYLWLL----DNSIPFNRFLVTQLNERLGLFISLVEYDRML 152 R D A+ +E + K +L L+ + RFL QL + ++ YD Sbjct: 95 RSADATAVTAAEGYVIGKKDFLALITQRPKTAEAVIRFLCAQLRDTTDRLETIALYD--- 151 Query: 153 EPDARVARCLAA----LFNPYLNPGIGLELQISQEEVGNLSGASRQRANQALQVLEKAGL 208 +ARVAR A + + L L +SQ ++ ++ GASR + N+A+ LE++G Sbjct: 152 -LNARVARFFLATLRQIHGSEMPQSANLRLTLSQTDIASILGASRPKVNRAILSLEESGA 210 Query: 209 LKVDYGSI 216 +K G I Sbjct: 211 IKRADGII 218 >alr0295 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Nos Nostoc sp. PCC 7120 Length = 232 Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 13/215 (6%) Query: 20 RALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHEGLLKMSSVSPEGKTVSFAG 79 + L +E + + +R PA + + D + EG +K+ + + EGK V+ Sbjct: 22 QGLPETAVELALNHLVTRTHPANQVILLENDWGGSVYFIVEGWVKIRTYNLEGKEVTLNI 81 Query: 80 MANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWLLDNSIPFNRFLVTQLNERL 139 + G GE + L + PR DV+ L + + MP ++ LL N+ P ++QL R Sbjct: 82 LGTGELFGEMAALDEVPRSTDVITLTTTMIGSMPSQDFVKLL-NTEPLAGVRLSQLMAR- 139 Query: 140 GLFISLVEYDRML-----EPDARVARCLAALFNPYLNPG-IGLEL-QISQEEVGNLSGAS 192 L + +R L + +RVA L L G G EL + E+ +LSG + Sbjct: 140 ----RLRQVNRRLRLRESDSQSRVADTLLFLAEGQGKRGQTGTELPNLPHRELSSLSGLA 195 Query: 193 RQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 R+ + L LEK GL+K D +I I DL L + Sbjct: 196 RETVTRVLTRLEKKGLIKRDQDTICIPDLSALEKM 230 >SMa1067 [T] COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases Sme Sinorhizobium meliloti Length = 248 Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 106/227 (46%), Gaps = 5/227 (2%) Query: 1 MIETSKTTIQDMLGKSIWARALTSEQLERVQSEIFSRKIPAGGFVCHKGDPVSHWIGVHE 60 M++ ++ + ++ + W ++T + +K V GD V G+ Sbjct: 19 MLDLTREKAEQVMRRGPWLASMTEPFRTELLRHAHLQKFAPDQVVYRHGDAVGGMYGLVA 78 Query: 61 GLLKMSSVSPEGKTVSFAGMANGGWLGEGSLLKDEPRKYDVVALRDSELLYMPKATYLWL 120 G L ++S P+ + G W GEG L +PR+ ++ AL + ++++P + Sbjct: 79 GSLTINSAPPDAASRLIHLGMPGAWTGEGPFLTGQPRRVELRALGGAWMMHVPLDALEQM 138 Query: 121 LDNSIPFNRFLVTQLNERLGLFISLVEYDRMLEPDARVARCLAALFNPYLNPGIGLELQI 180 + +R + + + + ++ +D L+ A V R +A++ G + + + Sbjct: 139 MARDPGVSRAIAMNTVFTVDVLLRII-HD--LQKRA-VGRRIASVLQRASWVG-DMPIPL 193 Query: 181 SQEEVGNLSGASRQRANQALQVLEKAGLLKVDYGSITILDLEGLRQF 227 SQ ++G ++ ASRQ+ N A+Q +AG + Y S+T+ + + LR+F Sbjct: 194 SQTDLGIMANASRQQVNTAMQRFARAGWVSYTYRSVTVSNSQALRRF 240