BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0028.0013.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MTH445 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus     122   3e-28
AGc3618 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58...    99   5e-21
alr1967 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                        85   6e-17
AF1473 [T] COG0784 FOG Afu Archaeoglobus fulgidus                      81   8e-16
DR0731 [T] COG0784 FOG Dra Deinococcus radiodurans                     81   1e-15

>MTH445 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus
          Length = 145

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 89/141 (63%), Gaps = 1/141 (0%)

Query: 8   MEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLH-P 66
           M   DI+LV+D+P  AELT  AL    LA+K+ W  D  EA DY+F+   +  R   + P
Sbjct: 2   MTDADILLVEDNPTDAELTIRALKKNNLANKLHWVKDGAEALDYIFASGSYSDRDPENLP 61

Query: 67  RLILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSA 126
           +LILLDL +P + G + L+ IK N +T+ IPVV+ +SS + RDIV+SY+LG N Y+ K  
Sbjct: 62  KLILLDLRMPKVDGLEVLQEIKRNDSTSKIPVVVLTSSKEDRDIVESYKLGVNSYVSKPV 121

Query: 127 DPREFIGTVADAGMYWMNRNK 147
           +  EFI  V+  G YWM  N+
Sbjct: 122 EFDEFISAVSTLGFYWMIINQ 142


>AGc3618 [T] COG0784 FOG Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 156

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 80/134 (59%)

Query: 9   EQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHPRL 68
           E   I+LV+D+P   ELT  AL+  +LA+++    D  EA DY+        R    P +
Sbjct: 8   ELRPILLVEDNPRDLELTLTALEKCQLANEVVVARDGTEALDYLNVTGSHHNRPGGDPAV 67

Query: 69  ILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSADP 128
           +LLDL LP + G + L+ +K +    HIPVVM +SS +++D+V+SY+LG N +++K  + 
Sbjct: 68  VLLDLKLPKVDGLEVLQTVKGSDHLRHIPVVMLTSSREEQDLVKSYELGVNAFVVKPVEF 127

Query: 129 REFIGTVADAGMYW 142
            +F   + D G++W
Sbjct: 128 NQFFKAIQDLGVFW 141


>alr1967 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 148

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 76/133 (57%), Gaps = 2/133 (1%)

Query: 11  MDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHPRLIL 70
           ++++LV+D+P   ELTRIAL+  K++  ++   D  EA  ++   + +      HP ++L
Sbjct: 10  IEVLLVEDNPGDVELTRIALEDSKISVHLSVVEDGVEAMAFLRKQDKYANVP--HPDIVL 67

Query: 71  LDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSADPRE 130
           LD +LP   G + L  IK+++    IPVV+ ++S  + DI+++Y L AN Y+ K  D  +
Sbjct: 68  LDFNLPRKDGREVLAEIKTDSYLKRIPVVVLTTSQAEEDILKAYNLAANCYITKPVDFDQ 127

Query: 131 FIGTVADAGMYWM 143
           F+  V     +W 
Sbjct: 128 FVRIVQSIENFWF 140


>AF1473 [T] COG0784 FOG Afu Archaeoglobus fulgidus
          Length = 133

 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 9/135 (6%)

Query: 13  IMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDLHPRLILLD 72
           I+LV+D+P+   + + A +  K+ + +    D EEA  Y+         ++  P LILLD
Sbjct: 4   ILLVEDNPDDVFMIKRAFEKAKIINPLDVAKDGEEAISYL---------QENKPVLILLD 54

Query: 73  LHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMKSADPREFI 132
           L LP +SG + LK +KS      IPVV+ +SS +  DI ++Y LGAN YL+K     + +
Sbjct: 55  LKLPKVSGFEVLKWVKSKERLKRIPVVVLTSSRNGEDINRAYDLGANSYLVKPVRFEDLL 114

Query: 133 GTVADAGMYWMNRNK 147
                  +YW+  N+
Sbjct: 115 NLTKHMNIYWLILNE 129


>DR0731 [T] COG0784 FOG Dra Deinococcus radiodurans
          Length = 137

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 11/139 (7%)

Query: 8   MEQMDIMLVDDSPEVAELTRIALDSKKLADKMTWFADAEEAADYMFSDNGFVARKDL--- 64
           M+   I+LVDD+P   ELT +AL+    A K+       EA D       F+ R D    
Sbjct: 1   MDHCSILLVDDNPHDVELTLLALEVGSGA-KVKVTTSGREALD-------FLERCDCPEK 52

Query: 65  HPRLILLDLHLPLMSGHDFLKIIKSNAATAHIPVVMFSSSDDQRDIVQSYQLGANGYLMK 124
            P LILLDL++P M+G + L  +++   T  IPVVM ++S ++RD   SY  GANGY++K
Sbjct: 53  RPDLILLDLNMPQMNGLEILDALRAGEETRDIPVVMLTTSSEERDQQASYAHGANGYVVK 112

Query: 125 SADPREFIGTVADAGMYWM 143
           + +  +F   +A     W+
Sbjct: 113 AFNLEQFGEALAQIKRRWL 131