BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0109.p         (62 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr3599 [T] COG3706 Response regulator containing a CheY-like re...    59   3e-09

>alr3599 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Nos Nostoc sp. PCC 7120
          Length = 344

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 2   VEALHIGHAHSITSEWVTVSIGAATVIPKEEQTQSDLIRLADKRLYKAKQRGKNRVMAQD 61
           V  L I H  S  S+ +T+S+G AT+ P  E + SDLI  ADK LYKAK+ G+NR+   +
Sbjct: 282 VRDLQIAHDKSAVSQHITLSMGVATITPTWESSPSDLIAAADKALYKAKESGRNRICQWE 341

Query: 62  D 62
           D
Sbjct: 342 D 342