BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0106.p (453 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll9511_1 [NT] COG0643 Chemotaxis protein histidine kinase and r... 374 e-103 PA3704_1 [NT] COG0643 Chemotaxis protein histidine kinase and re... 361 2e-99 VC2063 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 210 5e-54 BH2970 [NT] COG0643 Chemotaxis protein histidine kinase and rela... 210 6e-54 BS_cheA [NT] COG0643 Chemotaxis protein histidine kinase and rel... 203 6e-52 >mll9511_1 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Mlo Mesorhizobium loti Length = 630 Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust. Identities = 188/315 (59%), Positives = 242/315 (76%), Gaps = 7/315 (2%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VRD+G LGK VRL+IVG +T IDRDILE+LDAP+GHLLRNAVDHG+E P+ERL GKPE Sbjct: 302 VRDLGRTLGKRVRLEIVGGSTGIDRDILEQLDAPLGHLLRNAVDHGLEPPEERLAMGKPE 361 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 +G I LEARH+AG+LQ+ V DDG GI+++ L++ +VAR+L+T + LSE ELL FL L Sbjct: 362 EGLIRLEARHNAGLLQIAVVDDGRGIELSTLRETVVARQLATRESADTLSETELLAFLFL 421 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 PGFS++ +TD+SGRGVGLD V M K+VRG ++S G GTRFQLQLPLTLSV+R+LL Sbjct: 422 PGFSMKAGLTDVSGRGVGLDAVQAMTKEVRGVASVSSEFGHGTRFQLQLPLTLSVLRTLL 481 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAKG 240 V + GEPYAFPLA + +TL LQR ++++L+G HF RQIGLV+A ++L +GE ++ Sbjct: 482 VDVDGEPYAFPLAAIAKTLKLQRTQINLLQGRPHFRLNDRQIGLVTAREVLDRGEPGSEP 541 Query: 241 ESVMVVVI----GDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVL 296 + + VVV+ GD YGL VDRFLGER LV++ LD R KI ++ A ALMEDG+PVL Sbjct: 542 DELSVVVVDAGRGD---AYGLIVDRFLGERELVIRPLDPRFAKIKDISAAALMEDGSPVL 598 Query: 297 ILDVADMLRSVEKLS 311 I DV D++RSVEKL+ Sbjct: 599 IFDVDDLIRSVEKLA 613 >PA3704_1 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Pae Pseudomonas aeruginosa Length = 640 Score = 361 bits (927), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 184/319 (57%), Positives = 246/319 (77%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VRD+G +LGK VRL + G +T++DRD+LEKL+AP+ HLLRNAVDHGIE+P+ RL AGKP Sbjct: 315 VRDLGRSLGKQVRLLVEGESTQVDRDVLEKLEAPLTHLLRNAVDHGIEAPETRLAAGKPA 374 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 +GRIT+ ARH AGML + +SDDG GID+ +L++ ++ R+ +T + VA+LSE ELL FL L Sbjct: 375 EGRITIRARHHAGMLVLELSDDGGGIDLQRLRETVLNRQFATAETVAQLSEEELLAFLFL 434 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 PGFS+R+ VT++SGRGVGLD V M++Q+RG VR+ GQG F +++PLTLSV+RSL+ Sbjct: 435 PGFSMREQVTEVSGRGVGLDAVQHMVRQLRGGVRMEQRQGQGALFHVEVPLTLSVVRSLV 494 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAKG 240 V IG E YAFPLA++ R L+ EE+ LEG QHF +EGR +GLVSA Q+LQ+ E Sbjct: 495 VEIGEEAYAFPLAHIERMCELEAEEIVQLEGRQHFWYEGRHVGLVSAAQLLQRPESSRTE 554 Query: 241 ESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLILDV 300 ++ VVV+ D + YG+AV+RF+GER LVV LD RLGK+ +V AGAL++DG+PVLILDV Sbjct: 555 GAIPVVVVRDRDAVYGVAVERFVGERTLVVMPLDPRLGKVRDVSAGALLDDGSPVLILDV 614 Query: 301 ADMLRSVEKLSLAGQLENV 319 D+L SV KL +G+LE + Sbjct: 615 EDLLHSVGKLLSSGRLERI 633 >VC2063 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Vch Vibrio cholerae Length = 785 Score = 210 bits (535), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 110/307 (35%), Positives = 177/307 (57%), Gaps = 2/307 (0%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VRD+ +L K + L++ G T +D++++E L P+ HL+RN+VDHGIE P ER + GK Sbjct: 471 VRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKSR 530 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 G++ L A +Q+ + DDGAG+D +L+ V R + ED RL+ E + + Sbjct: 531 TGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIFM 590 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 PGFS ++ +TDISGRGVG+DVV + + G++ I ST G+GT+ +++PLTL+++ +L+ Sbjct: 591 PGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTLM 650 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQIL--QKGELRA 238 V + G P+A PLA VN L ++++G + I L L +KG+++ Sbjct: 651 VGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFYLQNWLAPKKGKVQL 710 Query: 239 KGESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLIL 298 + VV++ GL VD +G+ +V++ LD L P + + DG LIL Sbjct: 711 RQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITSDGHIALIL 770 Query: 299 DVADMLR 305 DV D+L+ Sbjct: 771 DVPDLLK 777 >BH2970 [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Bha Bacillus halodurans Length = 682 Score = 210 bits (534), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 177/305 (58%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 VR + L K V L+IVG T +DR I++++ P+ HL+RN++DHGIE+P+ R AGKPE Sbjct: 378 VRSLSKELNKKVNLEIVGAETELDRTIIDEIGDPLVHLIRNSIDHGIETPEVRRAAGKPE 437 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQLKKAIVARRLSTEDIVARLSEAELLEFLLL 120 +G + L A HS + + + DDGAGID ++ + + + TE+ A+++++++ + L Sbjct: 438 EGTVILRAFHSGNNVFIEIEDDGAGIDRDKVLQKALTNGVVTEEDAAKMNDSQVFQLLFA 497 Query: 121 PGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSLL 180 PGFS + +TDISGRGVGLDVV + + G V + S G+G+ F +QLPLTLS+I +L Sbjct: 498 PGFSTAEKITDISGRGVGLDVVQSTFESIGGVVSVTSKLGKGSLFSIQLPLTLSIIDVML 557 Query: 181 VSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAKG 240 V + E YA PL+ + T + + E+ + F G+ + LV I E R Sbjct: 558 VEVADEKYAIPLSSIVETAIVNKNEVYSAHNQKVIDFRGKVVPLVFLSDIFAVPEKREAD 617 Query: 241 ESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLILDV 300 E +V++ E GL VD +G+ +V+++L L + + ++ +G LI+D Sbjct: 618 ELYSLVIVHKGEKVAGLVVDSLIGQHDIVLKSLGDYLTDVFAISGATILGNGQVALIVDT 677 Query: 301 ADMLR 305 +++ Sbjct: 678 NALIK 682 >BS_cheA [NT] COG0643 Chemotaxis protein histidine kinase and related kinases Bsu Bacillus subtilis Length = 671 Score = 203 bits (517), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 103/301 (34%), Positives = 177/301 (58%), Gaps = 3/301 (0%) Query: 1 VRDVGHALGKSVRLDIVGHATRIDRDILEKLDAPIGHLLRNAVDHGIESPQERLQAGKPE 60 +R + L K + L I+G T +DR +++++ P+ HL+RN++DHGIE+P+ RLQ GKPE Sbjct: 368 IRQLQKELNKKIELSIIGAETELDRTVIDEIGDPLVHLIRNSIDHGIEAPETRLQKGKPE 427 Query: 61 QGRITLEARHSAGMLQVNVSDDGAGIDMAQ-LKKAIVARRLSTEDIVARLSEAELLEFLL 119 G++ L+A HS + + V DDGAG++ + L+K + R+ TE L + ++ E + Sbjct: 428 SGKVVLKAYHSGNHVFIEVEDDGAGLNRKKILEKPL--ERVITEKEAETLEDNQIYELIF 485 Query: 120 LPGFSLRDTVTDISGRGVGLDVVADMLKQVRGTVRIASTAGQGTRFQLQLPLTLSVIRSL 179 PGFS D ++DISGRGVGLDVV + L+ + G+V + S GQG+ F +QLPLTLS+I L Sbjct: 486 APGFSTADQISDISGRGVGLDVVKNKLESLGGSVSVKSAEGQGSLFSIQLPLTLSIISVL 545 Query: 180 LVSIGGEPYAFPLAYVNRTLALQREELDMLEGYQHFSFEGRQIGLVSAHQILQKGELRAK 239 L+ + E +A P++ + T + R+++ + F G + +V + + + R Sbjct: 546 LIKLEEETFAIPISSIIETAVIDRKDILQTHDREVIDFRGHIVPVVYLKEEFKIEDTRKD 605 Query: 240 GESVMVVVIGDNEHTYGLAVDRFLGERMLVVQALDARLGKIPNVQAGALMEDGAPVLILD 299 E + ++V+ + VD F+G++ +V+++L L + + ++ DG LI+D Sbjct: 606 AEQLHIIVVKKGDKPTAFVVDSFIGQQEVVLKSLGDYLTNVFAISGATILGDGEVALIID 665 Query: 300 V 300 Sbjct: 666 C 666