BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0099.p         (182 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3708 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseu...   106   2e-23

>PA3708 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas
           aeruginosa
          Length = 542

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 2/182 (1%)

Query: 1   MKNWTIKQRILGSFAVILILMAVMAGIAYTRLAKIDDEATSLRQDSTPGLYYSTMINAAW 60
           MKNWT++QRIL SFAVI+ +M +MA  AY ++  ++  A  ++ D+ PG+Y+ T++ ++W
Sbjct: 1   MKNWTVRQRILASFAVIIAIMLLMAATAYVKMLTVEKGAYRVQDDAMPGMYFITLVRSSW 60

Query: 61  YENLLLGQQIAQIDDTEATRQADIALLRANSERLNHLQEEYEKTIF--SPRDRALFDQFK 118
            +N L  Q++  I D     +A+   + A+ ERL+     Y+KT+     RD  L   F+
Sbjct: 61  TDNYLQTQELFGITDDHELSKAEADSILASEERLDQQIASYQKTMNPDEARDHELLAGFQ 120

Query: 119 QARMGYRQIQQDILRMDLSSPNAAVYKIISDQLRPAWRTGYVLTQKMVEINKTISDDSAH 178
             R  Y +    +L +          K+++  L   WR G     +M+E+NK I+D ++ 
Sbjct: 121 AVRKDYLEQHDKVLELYREKRFEEAGKLVAGPLTEHWREGRKYLNEMIELNKDIADRASD 180

Query: 179 RI 180
            I
Sbjct: 181 NI 182