BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0095.p (368 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0643 [S] COG4269 Predicted membrane protein Rso Ralstonia sol... 308 2e-83 SMc00782 Non COG 208 1e-53 AGc349 [S] COG4269 Predicted membrane protein Atu Agrobacterium ... 178 2e-44 DR2088 [S] COG4269 Predicted membrane protein Dra Deinococcus ra... 166 9e-41 YPO0399 [S] COG4269 Predicted membrane protein Ype Yersinia pestis 124 2e-28 >RSc0643 [S] COG4269 Predicted membrane protein Rso Ralstonia solanacearum Length = 358 Score = 308 bits (788), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 160/345 (46%), Positives = 217/345 (62%) Query: 24 PAQTGPSVEAFSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAKVRRLRYFYDNTTVAGTS 83 PA P F G GSEYFRIWIVNLLL++VT GIYSAWAKVR L+YFY NT + G S Sbjct: 14 PAPAVPQPLRVRFCGSGSEYFRIWIVNLLLTIVTLGIYSAWAKVRTLQYFYRNTQLGGAS 73 Query: 84 FEYHGNPIAILKGRIVAVVLLFGYQFAFSYNPLLGMIALLVFALAVPWLIWRSLQFKLYN 143 F+YHG+P AILKGR + VL + + +P+L ++ L L PWL+ RSL+F++ N Sbjct: 74 FDYHGSPTAILKGRAIIFVLALAFNLSGQVSPVLTLLLLAAIGLVFPWLLVRSLRFRMAN 133 Query: 144 SSYRGIRFGFRGNAGGAYKAYLLLPVLTVLTLYLLTPFTHQRIKRFQHNESRFGASHFSF 203 SSYRG+RF F G AYK +LL PVLTV T LL PF HQR K++QH +RFG + F F Sbjct: 134 SSYRGLRFAFTGKDAQAYKVFLLWPVLTVFTFNLLAPFAHQRFKQYQHRNTRFGTTSFDF 193 Query: 204 DGSVGSFYKTYLIGFGIYLAGFIAIVVALGGTALIAAGRDFGAHSVFSFMLLFFALYAWT 263 + G FY YL FG+ + +A+ V + + AA + L+ A+YA Sbjct: 194 SATAGQFYGVYLRTFGMAILAVMAVGVVVVLAGVSAAAGAASGGRAIAVSLMVLAMYAAM 253 Query: 264 FLMYPLFLTLLQNLIWNHTRLGEHRFHSAMRWPRMMFIAFTNIVGIVATLGLFTPFAQIR 323 + P FL LQN++WNHT LG HRF S + ++ +I +N ++ TLGLFTPFA++R Sbjct: 254 LFLGPYFLARLQNVVWNHTTLGAHRFQSQVSAGKLFWIFISNAALLIVTLGLFTPFARVR 313 Query: 324 ALRYKIESMSLHAAGNLDEFIADNAAQGSAAGEGLSDLLDFDLSL 368 + RYK+ES+++ AAG+LD F+A + + A G+ D D D++L Sbjct: 314 SARYKLESVTMLAAGSLDTFVAGESTRVGALGDAAVDWYDIDIAL 358 >SMc00782 Non COG Length = 370 Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 198/366 (54%), Gaps = 17/366 (4%) Query: 13 PNQPVSFASLLPAQTGPSVEAFSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAKVRRLRY 72 P Q S A G ++ SF+G GSEYF IWIVN+LL+++T GIYSAWAKVRR RY Sbjct: 6 PAQNAGERSFGRAAEG-DIQRLSFTGSGSEYFGIWIVNILLTIITLGIYSAWAKVRRNRY 64 Query: 73 FYDNTTVAGTSFEYHGNPIAILKGRIVAVVLLFGYQFAFSYNPLLGMIALLVFALAVPWL 132 FY NT + G FEYH + IL GR++ L Y ++ PL+G+ ++ VPWL Sbjct: 65 FYGNTILLGRGFEYHASGGQILIGRLIVFAYLVLYNIMLTFVPLVGIGLGVLMLFFVPWL 124 Query: 133 IWRSLQFKLYNSSYRGIRFGFRGNAGGAYKAYLLLPVLTVLTLYLLTPFTHQRIKRFQHN 192 + R L+F +SYR +RF F G AGGA+ A+++ PVL LTL +L P + R+ N Sbjct: 125 VARGLRFSARVTSYRNVRFDFVGGAGGAFLAFIIGPVLAALTLGILAPLASRWSYRYVGN 184 Query: 193 ESRFGASHFSFDGSVGSFYKTY-----LIGFGIYLAGF-----IAIV--VALGGTALIAA 240 R+G FS D +G Y+T+ ++ G+ + GF +A+V VA G A Sbjct: 185 NLRYGQKPFSTDPPLGRLYRTWVAPAAVLVLGMLIGGFFVFLGVALVNAVAEGAELSSQA 244 Query: 241 GRDFGAHSVFSFMLLFFALYAWTFLMYPLFLTLLQNLIWNHTRL-GEHRFHSAMRWPRMM 299 + F + LL FA++ L+Y ++N+ W+ T G HR S + R Sbjct: 245 LQGFTGLLLVLGYLLLFAIFGLAALIYR---AGVRNVAWSATSFDGRHRLLSDLSRLRYT 301 Query: 300 FIAFTNIVGIVATLGLFTPFAQIRALRYKIESMSLHAAGNLDEFIADNAAQGSAAGEGLS 359 +IA +N++ + TLGL P+A +R RY E + G++ E ++ A +GSA G Sbjct: 302 WIAVSNLIVTLVTLGLMRPWAAVRMARYVNEHTGVRFEGDVGELLSQIAQEGSAVGAEFM 361 Query: 360 DLLDFD 365 D+ FD Sbjct: 362 DIEGFD 367 >AGc349 [S] COG4269 Predicted membrane protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 367 Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/354 (31%), Positives = 184/354 (51%), Gaps = 19/354 (5%) Query: 30 SVEAFSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAKVRRLRYFYDNTTVAGTSFEYHGN 89 ++E SF+G EYF IWIVN+LL+++T GIYSAWAKVRR RYF NT +AG +F YH Sbjct: 12 AIERGSFNGNAKEYFGIWIVNILLTIMTLGIYSAWAKVRRKRYFNGNTLLAGRAFGYHAT 71 Query: 90 PIAILKGRIVAVVLLFGYQFAFSYNPLLGMIALLVFALAVPWLIWRSLQFKLYNSSYRGI 149 I KGR++A + Q +P L ++ + +PW+I RS++F +SYR + Sbjct: 72 GGQIFKGRLIAFAFIVFSQLVGLIHPFLVFAPTILLLIFLPWVITRSIRFNARVTSYRNV 131 Query: 150 RFGFRGNAGGAYKAYLLLPVLTVLTLYLLTPFTHQRIKRFQHNESRFGASHFSFDGSVGS 209 RF F G A GA+ + LL + +L++ +L P + R+ + +G FS D +G+ Sbjct: 132 RFDFVGTAWGAFVSILLGSFVALLSIGILAPLASRWANRYIVSNLHYGDRRFSTDPKIGA 191 Query: 210 FYKTYLIGFG-------------IYLAGFIAIVVALGGTALIAAGRDFGAHSVFSFMLLF 256 Y+ ++I I+LA + +G L A ++ ++F + Sbjct: 192 LYRAWIIPALLVVVGGVLAVFLLIFLAMVLVQAAGIGSRELATAPENYEIVTLFGLGQIL 251 Query: 257 FALYAWTFLMYPLFLTL----LQNLIWNHTRL-GEHRFHSAMRWPRMMFIAFTNIVGIVA 311 L L+Y T+ ++N++ + T L G+H HS + R ++I F+N++ + Sbjct: 252 INLLV-AMLIYGFASTVYKAGVRNVVVSSTLLDGKHELHSDLHRGRYLWIVFSNLIVTIF 310 Query: 312 TLGLFTPFAQIRALRYKIESMSLHAAGNLDEFIADNAAQGSAAGEGLSDLLDFD 365 T GL P+A +R +Y +E M + G++ E ++ A G+A D+ F+ Sbjct: 311 TFGLMRPWAAVREAQYAVERMGISFKGDMGEVLSSMEATGAAVSAEYMDMEGFE 364 >DR2088 [S] COG4269 Predicted membrane protein Dra Deinococcus radiodurans Length = 388 Score = 166 bits (420), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 117/380 (30%), Positives = 195/380 (51%), Gaps = 25/380 (6%) Query: 7 PPGQPEPNQPVSFASLLPAQTGPSVEAFSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAK 66 PPGQ P+ A+ P F+G+ SEYFR+WIVNL L+V+T G+Y+ WA+ Sbjct: 12 PPGQALLATPLGTANA-PQAARVHTYPLRFTGQASEYFRVWIVNLALTVITLGLYTPWAR 70 Query: 67 VRRLRYFYDNTTVAGTSFEYHGNPIAILKGRIVAVVLLFG-----YQFAFS-YNPLLGMI 120 +R +Y Y +T + +FEY +P A+L+G ++ VV FG Q F+ + + G + Sbjct: 71 IRTRQYLYGHTWLDDQNFEYTASPFALLRGYLI-VVAFFGLYTAAQQLQFTGWEWVTGAL 129 Query: 121 ALLVFALAVPWLIWRSLQFKLYNSSYRGIRFGFRGNAGGAYKAYLLLPVLTVLTLYLLTP 180 LL FA+A PWL+ +S++F+ ++ +RG+RF F G+ G AY +Y + + V + L P Sbjct: 130 GLL-FAVAYPWLVRQSMRFQARSTVHRGLRFRFTGSLGDAYVSYGVANIAAVFSGSLALP 188 Query: 181 FTHQRIKRFQHNESRFGASHFSFDGSVGSFYKTYLIGFGIYLAGFIAIV-VALGGTALIA 239 + +R+Q + +G + F GS+G FY L G G+ + G + +A+G + Sbjct: 189 WAWFMQRRYQADGLAYGTARGHFRGSLGPFYLIGLAGAGLTVLGIGLLAGLAIGAATIAG 248 Query: 240 AGRDFGAHSVFSFMLLFFALYAWTFLMYPLFLTLLQNLIWNHTRL-------------GE 286 D + + +L + A F++ L L +L + W + R G Sbjct: 249 VLGDLNLEQLDTDLLTSAVVVA--FVLGYLALAVLYGIAWQYVRAATMHYVLNNFELGGV 306 Query: 287 HRFHSAMRWPRMMFIAFTNIVGIVATLGLFTPFAQIRALRYKIESMSLHAAGNLDEFIAD 346 R + R+++I N + + +LGL TP+ IR RY + + + A +LD+F A Sbjct: 307 VRTQATFSPWRLVWINLANTLARIFSLGLLTPWTVIRTNRYLLGHVQVRAIVSLDDFSAA 366 Query: 347 NAAQGSAAGEGLSDLLDFDL 366 SA GE ++LLD ++ Sbjct: 367 QTEDESAVGEAATELLDINI 386 >YPO0399 [S] COG4269 Predicted membrane protein Ype Yersinia pestis Length = 398 Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/141 (46%), Positives = 89/141 (63%), Gaps = 4/141 (2%) Query: 25 AQTGPSVEAFSFSGRGSEYFRIWIVNLLLSVVTFGIYSAWAKVRRLRYFYDNTTVAGTSF 84 A S+ +F G G EYF IW+VNLLL+++T G+YSAWA VRR RYFY NT + G F Sbjct: 5 ASQNKSLHRVAFKGEGGEYFSIWLVNLLLTIITLGVYSAWATVRRRRYFYGNTELNGDRF 64 Query: 85 EYHGNPIAILKGRIVAV--VLLFGYQFAFSYNPLLGMIALLVFALAVPWLIWRSLQFKLY 142 +YH PI ILKGR++ + V+LF A + P LG++ LV +PW+I RS ++ Sbjct: 65 DYHAEPIEILKGRLMVIGGVILFYILLAIA--PTLGLLVALVLLALIPWIIIRSWRYNAI 122 Query: 143 NSSYRGIRFGFRGNAGGAYKA 163 +SYRG+RF + G AY A Sbjct: 123 MTSYRGVRFNYHCQTGQAYWA 143