BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0092.p         (206 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0472 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...   207   2e-53
AGpA419 [K] COG1309 Transcriptional regulator Atu Agrobacterium ...    88   2e-17

>RSc0472 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 213

 Score =  207 bits (526), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/194 (51%), Positives = 138/194 (71%), Gaps = 2/194 (1%)

Query: 10  KSELTLAAIVDTALEIAANEGLESLSLGEVAKRLNISKSGVFSRVGSREALQQAVLDEFD 69
           K ELT AAI+D ALE+A+ +GLE L++G +A+R+ +SKSGVF+  GSRE LQ  V+ E+ 
Sbjct: 20  KGELTRAAILDAALELASRDGLEGLTIGVLAERMQMSKSGVFAHFGSREDLQVEVVREYH 79

Query: 70  RRFVEEIFKPAMALPRGLPRLNKMIRNWLQRTNNDVS--CLYIAGAFEYDDVLDSPMRDR 127
           RRF  E+F P++  PRGLPRL  ++R W++R   +V+  C+YI+GA EYDD   SP+RD 
Sbjct: 80  RRFEREVFYPSLTEPRGLPRLWSLVRRWMERRIQEVTTGCIYISGAVEYDDRAGSPVRDE 139

Query: 128 IKKNILQWRGMLHRTIEQALEEGQLRPDTDPQQLVFELYCLMVGLMHDARFLRDPQALER 187
           + K++  WR  L R IEQA EEG LR + DP+ ++FE+Y L +GL HDARFLR P + E 
Sbjct: 140 LVKSVTIWRAALTRAIEQAKEEGHLRAEADPKLMLFEMYSLELGLHHDARFLRVPDSAEL 199

Query: 188 VQTAYDRLISTYRS 201
              A ++LI +YR+
Sbjct: 200 AMVALNKLIQSYRT 213


>AGpA419 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 221

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 4/190 (2%)

Query: 14  TLAAIVDTALEIAANEGLESLSLGEVAKRLNISKSGVFSRVGSREALQQAVLDEFDRRFV 73
           T A I+   ++  +  GL  +++G++A    +SKSG+F+   S+E LQ  +L E  R   
Sbjct: 17  TKAKILHIGIDQLSVSGLAGVTVGQLANASALSKSGLFAHFKSKEQLQIELLSEAARIAK 76

Query: 74  EEIFKPAMALPRGLPRLNKMIR---NWLQRTNNDVSCLYIAGAFEYDDVLDSPMRDRIKK 130
             I +PAM   +GL RL  ++     W +R      C   A  FE DD +   +RD   +
Sbjct: 77  LTIVEPAMKADQGLSRLRAVVELWFGWSRRAGLQGGCPLAAALFELDDDV-GDVRDHAAQ 135

Query: 131 NILQWRGMLHRTIEQALEEGQLRPDTDPQQLVFELYCLMVGLMHDARFLRDPQALERVQT 190
             ++WR +L   + +++  G L   TD  Q ++EL  + +      RF R+ +A  R   
Sbjct: 136 LTVRWRNLLTMLVGESVTAGHLSAATDVAQFIWELNGIYLNHHVSTRFFREKEADARATY 195

Query: 191 AYDRLISTYR 200
           A++ LI+ +R
Sbjct: 196 AFEALIARHR 205