BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0082.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2981 [R] COG2041 Sulfite oxidase and related enzymes Rso Rals...   126   2e-29
BMEII0305 [R] COG2041 Sulfite oxidase and related enzymes Bme Br...   102   2e-22
CC2748 Non COG                                                        102   3e-22
PA4692 [R] COG2041 Sulfite oxidase and related enzymes Pae Pseud...   100   9e-22
DR2536 [R] COG2041 Sulfite oxidase and related enzymes Dra Deino...    96   2e-20

>RSc2981 [R] COG2041 Sulfite oxidase and related enzymes Rso Ralstonia
           solanacearum
          Length = 331

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 91/146 (62%), Gaps = 8/146 (5%)

Query: 1   MLIK----IRPDQIDIPLASEITPQEVY-ASRRAFMSKVAAGAIAGSGLLGVGGAFAQPA 55
           MLIK    +R D  DIP ASEITPQ ++   RR   +     A A         AFA   
Sbjct: 1   MLIKTDRWLRGD--DIP-ASEITPQHLFDQRRRLLAAAALGAAGAALSPWAARRAFAASP 57

Query: 56  TARKLPARLNSVYAVMDKPTAYQDATTYNNYYEFGTDKADPARTAGTLKTSPWTVSIEGE 115
               L A+ N  YA ++KPT + + TTYNN+YEFGTDK+DPAR AGTL+  PW VS+EG 
Sbjct: 58  APAWLAAKPNPAYATVEKPTPFDEVTTYNNFYEFGTDKSDPARYAGTLRPHPWQVSVEGL 117

Query: 116 VKKPFTLDLDALMKLAPLEERIYRXR 141
           VK P T DLD LMK+AP+EERIYR R
Sbjct: 118 VKAPKTYDLDDLMKMAPMEERIYRLR 143


>BMEII0305 [R] COG2041 Sulfite oxidase and related enzymes Bme Brucella
           melitensis
          Length = 319

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 10/124 (8%)

Query: 18  ITPQEVYASRRAFMSKVAAGAIAGSGLLGVGGAFAQPATARKLPARLNSVYAVMDKPTAY 77
           +TP+ +Y  RR FM  +  GAIA +G      AFA P  A+       + Y V +K T  
Sbjct: 19  VTPKSIYLRRREFM--IGLGAIAATG--AASSAFADPLEAK------TTAYKVDEKLTPQ 68

Query: 78  QDATTYNNYYEFGTDKADPARTAGTLKTSPWTVSIEGEVKKPFTLDLDALMKLAPLEERI 137
              TTYNN+YEFGTDK+DP+  +G+ K  PW ++++G VK+P   D++ L+   PLEERI
Sbjct: 69  NAVTTYNNFYEFGTDKSDPSANSGSFKPLPWKLTVDGLVKQPKEFDVEELIAKMPLEERI 128

Query: 138 YRXR 141
           YR R
Sbjct: 129 YRMR 132


>CC2748 Non COG
          Length = 313

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 15/141 (10%)

Query: 1   MLIKIRPDQIDIPLASEITPQEVYASRRAFMSKVAAGAIAGSGLLGVGGAFAQPATARKL 60
           MLI+  PD  D    +++T   +Y  RR  M+ VA         LGV GA A  A A   
Sbjct: 8   MLIRHAPDLTD----NDVTDHSLYLKRRTLMAGVAG--------LGVAGASASHAQAGLT 55

Query: 61  PARLNSVYAVMDKPTAYQDATTYNNYYEFGTDKADPARTAGTLKTSPWTVSIEGEVKKPF 120
            +R    ++  +KPT+ +D TTYNN+YEFG DK+DPA  +G  K  PWTV I+G  + P 
Sbjct: 56  FSR---GFSTTEKPTSKEDITTYNNFYEFGVDKSDPAENSGKFKPRPWTVRIDGACEAPR 112

Query: 121 TLDLDALMKLAPLEERIYRXR 141
           T+ ++ L+    LEERIYR R
Sbjct: 113 TVGIEDLIGKNKLEERIYRMR 133


>PA4692 [R] COG2041 Sulfite oxidase and related enzymes Pae Pseudomonas
           aeruginosa
          Length = 337

 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 84/153 (54%), Gaps = 14/153 (9%)

Query: 1   MLIKIRPDQIDIPLASEITPQEVYASRRAFMSKVAAGAIAGSGLLGVGGAFAQ------- 53
           MLIKI P + D    SE+T + +Y SRR  +    AG    SGL  +G A  Q       
Sbjct: 1   MLIKI-PSRSDCS-ESEVTSETLYLSRRRLLGASFAGLALASGLPRLGFADEQRYAGVES 58

Query: 54  -PAT---ARKLP-ARLNSVYAVMDKPTAYQDATTYNNYYEFGTDKADPARTAGTLKTSPW 108
            PA    A KLP  R  +V    +  T ++DAT YNN+YEFG +K DPA  A  LK  PW
Sbjct: 59  VPAPGWFAEKLPQTRWQAVNVQGEAITPFKDATHYNNFYEFGPNKGDPAENASALKAEPW 118

Query: 109 TVSIEGEVKKPFTLDLDALMKLAPLEERIYRXR 141
           +V I+GEV KP T  L+  +K   LEERIYR R
Sbjct: 119 SVVIDGEVGKPGTYALEDFVKPYQLEERIYRLR 151


>DR2536 [R] COG2041 Sulfite oxidase and related enzymes Dra Deinococcus
           radiodurans
          Length = 361

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 52/79 (65%)

Query: 63  RLNSVYAVMDKPTAYQDATTYNNYYEFGTDKADPARTAGTLKTSPWTVSIEGEVKKPFTL 122
           R    Y   +  T Y+D TTYNN+YE G  K DPAR AG L T PWTV ++GEVKKP TL
Sbjct: 72  RPTGPYDTQEAMTGYRDMTTYNNFYELGLGKDDPARHAGALPTRPWTVVVDGEVKKPVTL 131

Query: 123 DLDALMKLAPLEERIYRXR 141
           D+D L    PLE+RIYR R
Sbjct: 132 DIDTLQSWFPLEDRIYRMR 150