BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0074.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

cydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Ec...   149   2e-36
ZcydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 E...   149   2e-36
ECs0768 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1...   149   2e-36
VC1844 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 ...   146   2e-35
STM0740 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1...   146   2e-35

>cydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Eco
           Escherichia coli K12
          Length = 523

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 96/139 (69%)

Query: 1   VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWI 60
           VAPL+++FR MVA G L L I + SF+ ++R ++  ++WLLR A++ IPLPWIA E GW 
Sbjct: 384 VAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWF 443

Query: 61  VAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPS 120
           VAEYGRQPW I  +LPT ++ S+L A  L FS+      YT  LV E+ LM K+A+ GPS
Sbjct: 444 VAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPS 503

Query: 121 SLHTGKYHWELLEKTKKPA 139
           SL TG+YH+E    T +PA
Sbjct: 504 SLKTGRYHFEQSSTTTQPA 522


>ZcydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 EcZ
           Escherichia coli O157:H7 EDL933
          Length = 523

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 96/139 (69%)

Query: 1   VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWI 60
           VAPL+++FR MVA G L L I + SF+ ++R ++  ++WLLR A++ IPLPWIA E GW 
Sbjct: 384 VAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWF 443

Query: 61  VAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPS 120
           VAEYGRQPW I  +LPT ++ S+L A  L FS+      YT  LV E+ LM K+A+ GPS
Sbjct: 444 VAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPS 503

Query: 121 SLHTGKYHWELLEKTKKPA 139
           SL TG+YH+E    T +PA
Sbjct: 504 SLKTGRYHFEQSSTTTQPA 522


>ECs0768 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Ecs
           Escherichia coli O157:H7
          Length = 523

 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 96/139 (69%)

Query: 1   VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWI 60
           VAPL+++FR MVA G L L I + SF+ ++R ++  ++WLLR A++ IPLPWIA E GW 
Sbjct: 384 VAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWF 443

Query: 61  VAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPS 120
           VAEYGRQPW I  +LPT ++ S+L A  L FS+      YT  LV E+ LM K+A+ GPS
Sbjct: 444 VAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPS 503

Query: 121 SLHTGKYHWELLEKTKKPA 139
           SL TG+YH+E    T +PA
Sbjct: 504 SLKTGRYHFEQSSTTTQPA 522


>VC1844 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Vch Vibrio
           cholerae
          Length = 541

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 65/128 (50%), Positives = 90/128 (70%)

Query: 3   PLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWIVA 62
           PLFWSFR MVA G + L +F A+F    R+++  ++W+L+ A+FSIPLPWIA E GW VA
Sbjct: 398 PLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVA 457

Query: 63  EYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPSSL 122
           EYGRQPW +  ILP  ++AS L A  +  S+   +  YT  L+ E+ LM+K+ ++GPSSL
Sbjct: 458 EYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEVYLMVKFTRKGPSSL 517

Query: 123 HTGKYHWE 130
            TG+YH+E
Sbjct: 518 KTGRYHFE 525


>STM0740 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Sty
           Salmonella typhimurium LT2
          Length = 522

 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 95/139 (68%)

Query: 1   VAPLFWSFRGMVALGMLFLFIFSASFYFLVRKQLAPQRWLLRLAVFSIPLPWIAAELGWI 60
           VAPL+++FR MVA G L L I + SF+ ++R ++  ++WLLR A++ IPLPWIA E GW 
Sbjct: 383 VAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWF 442

Query: 61  VAEYGRQPWTIAGILPTRLSASTLQASSLYFSLAGFVLFYTFLLVVEMMLMIKYAKRGPS 120
           VAEYGRQPW I  +LPT ++ S+L    L FS+      YT  LV E+ LM K+A+ GPS
Sbjct: 443 VAEYGRQPWAIGEVLPTAVANSSLTVGDLLFSMFLICGLYTLFLVAELFLMFKFARLGPS 502

Query: 121 SLHTGKYHWELLEKTKKPA 139
           SL TG+YH+E    T +PA
Sbjct: 503 SLKTGRYHFEQSTVTSQPA 521