BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0073.p (380 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0741 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2... 433 e-121 cydB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Ec... 424 e-118 ZcydB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 E... 424 e-118 ECs0769 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2... 424 e-118 YPO1118 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2... 417 e-116 >STM0741 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Sty Salmonella typhimurium LT2 Length = 379 Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/379 (54%), Positives = 271/379 (71%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 + DYE L+ IWW VG+L+IGFA+TDGFD GVGM+ F+G+ D ERR++INSI P W+GN Sbjct: 1 MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ DPRWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDPRWRNMWD 120 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 WG+F+G VPPL+ GVAFGNLL GVPFH D+ +R+ YTG+FF+LLNPFGLLAG++SV M+ Sbjct: 121 WGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGNFFQLLNPFGLLAGIVSVGMI 180 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 +T GAT++ ++T + RAR + +AL TL F AG WV +GIDGY +T ++A Sbjct: 181 ITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALAGVWVMYGIDGYVVTSAIDHHAA 240 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 PL K V +GAW+ N+ P +P + LL ++ K AF+ S + +A Sbjct: 241 SNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFLFSSLTLA 300 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 IILTA AMFPF+MPSS +SLT+WD+ SS TL +M W+ FVP+I++YT+W Y Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQMTLNLMTWVAAVFVPIILIYTSWCYW 360 Query: 362 VMRGKVTLKHIADNEHTAY 380 M G++T +HI N H+ Y Sbjct: 361 KMFGRITKEHIESNTHSLY 379 >cydB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Eco Escherichia coli K12 Length = 379 Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/379 (54%), Positives = 268/379 (70%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 + DYE L+ IWW VGVL+IGFA+TDGFD GVGM+ F+G+ D ERR++INSI P W+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ + RWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 WG+F+G VPPL+ GVAFGNLL GVPF+ D+ +R+ YTG+FF+LLNPFGLLAGV+SV M+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 +T GAT++ ++T + R R A +AL TL F AG WV +GIDGY + +A Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 PL K V +GAW+ N+ P AIP + LL ++ KA AF+ S + +A Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 IILTA AMFPF+MPSS +SLT+WD+ SS TL +M W+ + VP+I++YTAW Y Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 362 VMRGKVTLKHIADNEHTAY 380 M G++T + I N H+ Y Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >ZcydB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 EcZ Escherichia coli O157:H7 EDL933 Length = 379 Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/379 (54%), Positives = 268/379 (70%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 + DYE L+ IWW VGVL+IGFA+TDGFD GVGM+ F+G+ D ERR++INSI P W+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ + RWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 WG+F+G VPPL+ GVAFGNLL GVPF+ D+ +R+ YTG+FF+LLNPFGLLAGV+SV M+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 +T GAT++ ++T + R R A +AL TL F AG WV +GIDGY + +A Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 PL K V +GAW+ N+ P AIP + LL ++ KA AF+ S + +A Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 IILTA AMFPF+MPSS +SLT+WD+ SS TL +M W+ + VP+I++YTAW Y Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 362 VMRGKVTLKHIADNEHTAY 380 M G++T + I N H+ Y Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >ECs0769 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Ecs Escherichia coli O157:H7 Length = 379 Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/379 (54%), Positives = 268/379 (70%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 + DYE L+ IWW VGVL+IGFA+TDGFD GVGM+ F+G+ D ERR++INSI P W+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFY+A++++L SLFFRPVGFDYRSK+ + RWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 WG+F+G VPPL+ GVAFGNLL GVPF+ D+ +R+ YTG+FF+LLNPFGLLAGV+SV M+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 +T GAT++ ++T + R R A +AL TL F AG WV +GIDGY + +A Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 PL K V +GAW+ N+ P AIP + LL ++ KA AF+ S + +A Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 IILTA AMFPF+MPSS +SLT+WD+ SS TL +M W+ + VP+I++YTAW Y Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 362 VMRGKVTLKHIADNEHTAY 380 M G++T + I N H+ Y Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >YPO1118 [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 Ype Yersinia pestis Length = 379 Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/379 (51%), Positives = 270/379 (71%) Query: 2 IFDYETLKIIWWAFVGVLIIGFALTDGFDFGVGMMLPFVGKTDAERRVLINSIGPTWEGN 61 +FDYE L+ IWW +GVL+IGFA+TDGFD GVG++L +GK D ERR++INSI P W+GN Sbjct: 1 MFDYEVLRFIWWLLIGVLLIGFAVTDGFDMGVGILLRIIGKNDTERRIMINSIAPHWDGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWP+VYA AFSGFYIA++++L +LFFRPVGFDYRSK+ + RWRN WD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYIAMILVLAALFFRPVGFDYRSKLENSRWRNMWD 120 Query: 122 WGLFVGGIVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFELLNPFGLLAGVLSVAML 181 WG+F+G VP ++ GVAFGNLL GVPFH ++ MR+ YTG+FF+LLNPFGLLAG++S+ ML Sbjct: 121 WGIFIGSFVPAVVFGVAFGNLLQGVPFHMNEYMRLFYTGNFFQLLNPFGLLAGIVSLTML 180 Query: 182 LTHGATFIMVKTEAAIAARARKIALWSALATLALFVAAGFWVAHGIDGYSITDMPSANSA 241 +T GAT++ ++T + R+RK A SAL F+ AG W+ GIDG+ IT + + Sbjct: 181 VTQGATYLQMRTRGELHLRSRKAAQISALVMSVAFLLAGIWLVKGIDGFVITSVLDTAAE 240 Query: 242 FMPLAKTVEIVSGAWMDNYTRWPATRAIPIAAIAGLLLVLIFGAWRKARLAFIGSGIAVA 301 P+ K V +GAW+ N+ ++P A+P + L ++ + K AF+ S + +A Sbjct: 241 SNPMRKEVAHQAGAWLINFNKYPILWALPALGVILPLFTILLSRFEKGAWAFLFSSLTIA 300 Query: 302 GIILTAATAMFPFIMPSSLDPRSSLTIWDSVSSHKTLGIMFWLVLFFVPLIMMYTAWVYR 361 +ILTA MFPF+MPSS P SLT+WD+ SS TL +M + + FVP+I++YT+W Y Sbjct: 301 CVILTAGVTMFPFVMPSSTMPNVSLTMWDATSSLLTLKVMTIVAIIFVPIILLYTSWCYY 360 Query: 362 VMRGKVTLKHIADNEHTAY 380 M G++ + I +N+H+ Y Sbjct: 361 KMFGRIDKEFIENNKHSLY 379