BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0058.p (291 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport... 243 3e-64 SMc03121 [E] COG0683 ABC-type branched-chain amino acid transpor... 237 2e-62 BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transpo... 233 4e-61 RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport... 221 2e-57 RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport... 110 5e-24 >AGl1462 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 402 Score = 243 bits (621), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 120/214 (56%), Positives = 153/214 (71%) Query: 4 AREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHWMF 63 AR+W D ++V++I +LT+SSV LAVQ L K+K I + +G AT LT +C+ GFHW + Sbjct: 87 ARQWYDTEQVDSIMELTSSSVGLAVQALSKDKKKITVNTGAATTELTGKQCSPYGFHWAY 146 Query: 64 DTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLNAS 123 DTYS A G AL K G SW+F+T DYAFG+SLE++ S+ VKANGG VLGSVRHPL + Sbjct: 147 DTYSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTSNFVKANGGKVLGSVRHPLATT 206 Query: 124 DFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHALGL 183 D+SSFLLQAQ+S A+VIGLA+ G D NAIKQA F + QRL ALL L++VH LGL Sbjct: 207 DYSSFLLQAQSSGAKVIGLANAGLDTSNAIKQASEFGIVAGGQRLAALLFTLAEVHGLGL 266 Query: 184 DAAQGLVYTDGFYWDYDEQTRGFSPPPPRIEGAL 217 +AAQGL T+GFYWD D+++R F GA+ Sbjct: 267 EAAQGLTLTEGFYWDRDDESRKFGERFKERTGAM 300 >SMc03121 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Sme Sinorhizobium meliloti Length = 401 Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 116/203 (57%), Positives = 148/203 (72%) Query: 4 AREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHWMF 63 AR+W D ++V++I +LT SSVALAVQ + KEK I + +G AT LT +C+ GFHW + Sbjct: 86 ARQWYDTEQVDSIMELTTSSVALAVQAISKEKKKIDIVTGAATTELTGKQCSPYGFHWAY 145 Query: 64 DTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLNAS 123 DT+S A G AL K G SW+F+T DYAFG+SLE++ + VK NGGTV+G+VRHPL + Sbjct: 146 DTHSLAVGTGGALVKQGGDSWFFLTADYAFGYSLEENTGNYVKENGGTVVGAVRHPLATT 205 Query: 124 DFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHALGL 183 DFSSFLLQAQ+S A+VIGLA+ G D NAIKQA F + QRL ALL L++VH LGL Sbjct: 206 DFSSFLLQAQSSGAKVIGLANAGLDTSNAIKQAAEFGIVQGGQRLAALLFTLAEVHGLGL 265 Query: 184 DAAQGLVYTDGFYWDYDEQTRGF 206 DAAQGL T+GFYW+ DE++ F Sbjct: 266 DAAQGLTLTEGFYWNRDEESAKF 288 >BMEII0344 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Bme Brucella melitensis Length = 401 Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 111/203 (54%), Positives = 146/203 (71%) Query: 4 AREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHWMF 63 AR+W D ++V++I +LT SSV LAVQ L KEK I + +G AT LT +C GFHW + Sbjct: 86 ARQWYDTEQVDSIMELTTSSVGLAVQALSKEKKKITINTGAATSELTGKQCTPYGFHWAY 145 Query: 64 DTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLNAS 123 DT++ A G +L + G +WYF+T DYAFG+SLE+ + V++ GG VLGSVRHPL+ + Sbjct: 146 DTHALAVGTGGSLVQQGGDTWYFLTADYAFGYSLEEQTTKFVESKGGKVLGSVRHPLSTT 205 Query: 124 DFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHALGL 183 D+SSFLLQAQAS A+V+GLA+ G D NAIKQA F + QRL ALL L++VH LGL Sbjct: 206 DYSSFLLQAQASGAKVVGLANAGLDTSNAIKQAAEFGIVAGGQRLAALLFTLAEVHGLGL 265 Query: 184 DAAQGLVYTDGFYWDYDEQTRGF 206 +AAQGL T+GFYWD D+++R F Sbjct: 266 EAAQGLTLTEGFYWDRDDESRAF 288 >RSc3342 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 402 Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 104/206 (50%), Positives = 148/206 (71%), Gaps = 1/206 (0%) Query: 2 TRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFHW 61 ++AREW+D+ ++ + TNS+ +LA+ K+ EK + + G T LT EC H+ Sbjct: 87 SKAREWMDQQGLDMLVGGTNSATSLAMSKVAAEKKRVFIGIGAGTARLTNEECTPYTIHY 146 Query: 62 MFDTYSQAAGAAAALTKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRHPLN 121 +DT + A G +A+ K G KSW+F+T DYAFGHSLE D + VVKANGGTV+GSV+HPL+ Sbjct: 147 AYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLENDTAAVVKANGGTVVGSVKHPLS 206 Query: 122 ASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDVHAL 181 ASDFSS+LLQAQASKAQ++GLA+ G D +N+IK A+ F + K ++ LL+F++DVH+L Sbjct: 207 ASDFSSYLLQAQASKAQILGLANAGGDTINSIKAAKEFGI-TKTMKIAGLLMFINDVHSL 265 Query: 182 GLDAAQGLVYTDGFYWDYDEQTRGFS 207 GL A+GL+ TD +YWD ++ TR F+ Sbjct: 266 GLQTAEGLLMTDSWYWDMNDATRKFA 291 >RSp1298 [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component Rso Ralstonia solanacearum Length = 391 Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 116/199 (58%), Gaps = 6/199 (3%) Query: 1 VTRAREWLDRDKVEAIADLTNSSVALAVQKLIKEKGGIAMYSGPATGALTTAECASNGFH 60 V +AR+ ++RD+V + NS +A A+ ++ EK + + SG T +T ++C N + Sbjct: 96 VQKARKLIERDQVSFLIGDVNSGIAQAIAQVSNEKKVLHIVSGGHTDTITGSDCKWNVYR 155 Query: 61 WMFDTYSQAAGAAAAL--TKLGNKSWYFVTVDYAFGHSLEKDASDVVKANGGTVLGSVRH 118 + +T S A A A L +K G K W+F+T DYAFGH+L+K A+ ++ GGT+ G+ Sbjct: 156 -VCNTTSMEANAVANLLFSKYG-KKWHFITPDYAFGHTLQKAAAADLQKLGGTITGNELT 213 Query: 119 PLNASDFSSFLLQAQASKAQVIGLADGGTDVVNAIKQARSFAVGGKDQRLVALLVFLSDV 178 PL +DFS++L++A+A+ V+ + G+D+VN +KQ F + GK + L L + Sbjct: 214 PLGTTDFSAYLIKARAANPDVLLVLPQGSDMVNCLKQIAQFGI-GKQMHIAGLQQELESL 272 Query: 179 HALGLDAAQGLVYTDGFYW 197 A+ +A G ++ +YW Sbjct: 273 EAMPPEARVG-IWMFEWYW 290