BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0055.p (263 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2013 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Pae P... 250 3e-66 RSc0267 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Rso ... 222 6e-58 SMb21126 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Sme... 194 1e-49 CC2169 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ccr C... 164 2e-40 AGl2700 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Atu ... 130 3e-30 >PA2013 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Pae Pseudomonas aeruginosa Length = 265 Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 127/257 (49%), Positives = 167/257 (64%) Query: 3 QVADLTIDARGVATITLNRPEVHNAFDDLLIARLIDLIGQARDDPHVNVLVLASTGKSFS 62 Q L ID RGVAT+ L+R E +NAF+ ++I L+ I + DP V +LVL G+ F Sbjct: 5 QTIQLEIDPRGVATLWLDRAEKNNAFNAVVIDELLQAIDRVGSDPQVRLLVLRGRGRHFC 64 Query: 63 AGADLGWMRRMADATREDNLKDAHQLAALMENLNSFPCPTVARIQGAVMGGGVGLVACCD 122 GADL WM++ D + NL DA ++A LM +L + P PT+A +QGAV GGGVGLV+CCD Sbjct: 65 GGADLAWMQQSVDLDYQGNLADAQRIAELMTHLYNLPKPTLAVVQGAVFGGGVGLVSCCD 124 Query: 123 VAIAGDNAFFALSEVKLGLAPAVISPYVIAKIGTSQARRYFVTAERFSAIRAAAIDLVHE 182 +AI D+A F LSEV++GL PA I+P+V+ IG ARRY +TAERF RA+ + L+ E Sbjct: 125 MAIGSDDATFCLSEVRIGLIPATIAPFVVKAIGQRAARRYSLTAERFDGRRASELGLLSE 184 Query: 183 VVPATELEAKTEQIIVALLANGPQAMRRAKELAQVANPLPATPALRDYTTGVIADLRASE 242 PA ELE++ E I LL N P+A+ K L +PALR YT IA +R S Sbjct: 185 SCPAAELESQAEAWIANLLQNSPRALVACKALYHEVEAAELSPALRRYTEAAIARIRISP 244 Query: 243 EGKEGLRAFLEKESPSW 259 EG+EGLRAFLEK +P+W Sbjct: 245 EGQEGLRAFLEKRTPAW 261 >RSc0267 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Rso Ralstonia solanacearum Length = 264 Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 114/247 (46%), Positives = 157/247 (63%) Query: 14 VATITLNRPEVHNAFDDLLIARLIDLIGQARDDPHVNVLVLASTGKSFSAGADLGWMRRM 73 VAT+TLNRP+V NAF++ +IA L + V +VLA G +F AGADL WMR+M Sbjct: 15 VATVTLNRPDVRNAFNETVIAELTGAFHALATEDSVRAIVLAGHGPAFCAGADLNWMRKM 74 Query: 74 ADATREDNLKDAHQLAALMENLNSFPCPTVARIQGAVMGGGVGLVACCDVAIAGDNAFFA 133 A + ++N DA +LA ++ +++ P P VAR+ G GGVGLV+ CD+ +A D A F Sbjct: 75 AGYSDDENRADALRLAEMLRAIHACPKPVVARVHGDTYAGGVGLVSACDIVVAADTAHFC 134 Query: 134 LSEVKLGLAPAVISPYVIAKIGTSQARRYFVTAERFSAIRAAAIDLVHEVVPATELEAKT 193 LSE +LGL PA ISPYVI +G +RRYF+TAERF+A A + LVHE+ A L+A Sbjct: 135 LSEARLGLIPATISPYVIRALGEQASRRYFITAERFTAAEAHRLGLVHELAGAEALDATV 194 Query: 194 EQIIVALLANGPQAMRRAKELAQVANPLPATPALRDYTTGVIADLRASEEGKEGLRAFLE 253 + + AL+AN P A+R +K L + P AL T IA +RAS EG+EG+++FL Sbjct: 195 DALTAALVANSPNAVRESKRLVREIASAPIDDALLADTANRIAAIRASTEGREGVQSFLG 254 Query: 254 KESPSWI 260 K P+W+ Sbjct: 255 KRKPNWL 261 >SMb21126 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Sme Sinorhizobium meliloti Length = 261 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/251 (42%), Positives = 144/251 (57%), Gaps = 1/251 (0%) Query: 9 IDARGVATITLNRPEVHNAFDDLLIARLIDLIGQARDDPHVNVLVLASTGKSFSAGADLG 68 ID RGVA +TL R E HNA +I L ++G+ D + ++L + GKSF AG DL Sbjct: 10 IDQRGVARVTLARSEKHNALSATMIGELTAVVGRLATDASIRAVILDAEGKSFCAGGDLD 69 Query: 69 WMRRMADATREDNLKDAHQLAALMENLNSFPCPTVARIQGAVMGGGVGLVACCDVAIAGD 128 WMR+ A R + +A +LA +++ LN P P +AR+ G GGGVGL++ CD IA Sbjct: 70 WMRQQFSADRPTRIAEATRLAMMLKALNDLPKPLIARVHGNAFGGGVGLISVCDTVIAAS 129 Query: 129 NAFFALSEVKLGLAPAVISPYVIAKIGTSQARRYFVTAERFSAIRAAAIDLVHEVVPATE 188 A F L+E +LGL PA ISPYVIA+ G ++AR F++A F A A V VV T Sbjct: 130 GAQFGLTETRLGLIPATISPYVIARTGEARARPLFMSARVFGAEEAKVAGFVTTVVDGTM 189 Query: 189 LEAKTEQIIVALLANGPQAMRRAKELAQVANPLPATPALRDYTTGVIADLRASEEGKEGL 248 L+ E + A L P A RAK LA+ LP T A+ T +AD ++E +EG+ Sbjct: 190 LDGAVEAAVTAYLVAAPGAAGRAKRLARSLG-LPITDAVIAATIEQLADTWETDEAREGV 248 Query: 249 RAFLEKESPSW 259 AF E+ +PSW Sbjct: 249 SAFFERRNPSW 259 >CC2169 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ccr Caulobacter vibrioides Length = 262 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/261 (39%), Positives = 134/261 (51%), Gaps = 1/261 (0%) Query: 1 MSQVADLTIDARGVATITLNRPEVHNAFDDLLIARLIDLIGQARDDPHVNVLVLASTGKS 60 MS + + G T+ +NRP+ NAFD IA L V ++ L G + Sbjct: 1 MSPLVHMDSTPEGAVTVWINRPDKKNAFDAATIAALRQTFETLHGAEGVRIVFLRGVGGA 60 Query: 61 FSAGADLGWMRRMADATREDNLKDAHQLAALMENLNSFPCPTVARIQGAVMGGGVGLVAC 120 FSAGADL WM + +DN +DA +LA +++ L+ P TVA ++G GGG GLVA Sbjct: 61 FSAGADLSWMASAVEWDEDDNRQDALELAHMLKALHDIPALTVALVEGPAFGGGAGLVAA 120 Query: 121 CDVAIAGDNAFFALSEVKLGLAPAVISPYVIAKIGTSQARRYFVTAERFSAIRAAAIDLV 180 CD A+A +A FA SEVKLGL PA ISPYVI +G A+ F T F A A LV Sbjct: 121 CDHALALVDAKFAFSEVKLGLTPATISPYVIQALGPRTAKLLFATGRVFDADDAWGFGLV 180 Query: 181 HEVVP-ATELEAKTEQIIVALLANGPQAMRRAKELAQVANPLPATPALRDYTTGVIADLR 239 EV LE + +I + P A+ AK L L D + IA R Sbjct: 181 DEVFEDVASLEGARDALIAEMAPCAPGAIGDAKALVNDFVGQKLDKGLIDESARRIARRR 240 Query: 240 ASEEGKEGLRAFLEKESPSWI 260 S EG+EG+RAFL + PSW+ Sbjct: 241 VSPEGQEGVRAFLARRKPSWV 261 >AGl2700 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 280 Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 129/251 (51%), Gaps = 14/251 (5%) Query: 17 ITLNRPEVHNAFDDLLIARLIDLIGQARDDPHVNVLVLASTG-KSFSAGADL----GWMR 71 +TLNRPEVHNA + + L D I A D + +V+ + G +SF +GADL G M Sbjct: 38 LTLNRPEVHNALNAAMTEALTDAIRAASGDGSLRAVVITAAGDRSFCSGADLKESAGGMF 97 Query: 72 RMADATREDNLKDAHQLAALMENLNSFPCPTVARIQGAVMGGGVGLVACCDVAIAGDNAF 131 + T + +A +M + S P +ARI G V+ GG+GLVA CD+A A D+A Sbjct: 98 LSPNGT--------NPIANVMRAIESCDKPVIARINGRVLAGGLGLVATCDLAYAADHAE 149 Query: 132 FALSEVKLGLAPAVISPYVIAKIGTSQARRYFVTAERFSAIRAAAIDLVHEVVPATELEA 191 F L EV++GL P +++ ++AK+ + + +A A + LV+ P EL+ Sbjct: 150 FGLPEVRVGLFPTMVAAKLLAKMPLGGLQEMAYLGQPITAAEAKGLGLVNRTAPLAELDG 209 Query: 192 KTEQIIVALLANGPQAMRRAKELAQVANPLPATPALRDYTTGVIADLRASEEGKEGLRAF 251 E+++ L N P A+ K +P+ L + IA + S+E +EG +AF Sbjct: 210 LIEEVLAKLRQNAPGAIAAGKAALLAMRDMPSDERL-AFAEDAIAAISGSDEAREGRQAF 268 Query: 252 LEKESPSWIAK 262 EK P WI + Sbjct: 269 AEKRPPKWIGR 279