BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0050.p (419 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2381_1 [J] COG0143 Methionyl-tRNA synthetase Rso Ralstonia so... 577 e-164 NMA0275_1 [J] COG0143 Methionyl-tRNA synthetase NmA Neisseria me... 540 e-153 NMB0030_1 [J] COG0143 Methionyl-tRNA synthetase Nme Neisseria me... 539 e-153 PM0303_1 [J] COG0143 Methionyl-tRNA synthetase Pmu Pasteurella m... 463 e-130 HI1276_1 [J] COG0143 Methionyl-tRNA synthetase Hin Haemophilus i... 446 e-125 >RSc2381_1 [J] COG0143 Methionyl-tRNA synthetase Rso Ralstonia solanacearum Length = 574 Score = 577 bits (1486), Expect = e-164, Method: Compositional matrix adjust. Identities = 272/419 (64%), Positives = 320/419 (76%), Gaps = 7/419 (1%) Query: 1 MFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLSGATPVMKSSEHFFFK 60 MFLPDR+IKGECPKCG KDQYGDSCE C A Y PTDLKNPYS +SGATPV KSSEH+FFK Sbjct: 133 MFLPDRFIKGECPKCGAKDQYGDSCEVCGATYQPTDLKNPYSVVSGATPVRKSSEHYFFK 192 Query: 61 LSDPKCVAFLREWALDNNRLQPEVANKAKEWL--DGEGGLGDWDISRDAPYFGIEIPDAP 118 LSDP+C FLR+W D QPE NK +EWL +GE L DWDISRDAPYFG EIP AP Sbjct: 193 LSDPRCETFLRDWVGD--LAQPEATNKMREWLGDEGESTLSDWDISRDAPYFGFEIPGAP 250 Query: 119 GKYFYVWLDAPIGYLASLKNYFGKTGRDFDAFMADDKT-EQYHFIGKDITYFHTLFWPAM 177 GKYFYVWLDAP+GY AS KN GK G DFDA+++ T EQYHFIGKDI YFHTLFWPAM Sbjct: 251 GKYFYVWLDAPVGYYASFKNLCGKLGLDFDAWVSTHSTAEQYHFIGKDILYFHTLFWPAM 310 Query: 178 LKFAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIAAKLNAKV 237 L+F+G +TPTNVFAHGF+TV G KMSKSRGT I+ Y+D G+NPEWLRYY AAKLNA + Sbjct: 311 LQFSGHRTPTNVFAHGFLTVDGAKMSKSRGTFITAQSYIDTGLNPEWLRYYFAAKLNATM 370 Query: 238 EDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGKLSTAWATADDAFLTKLRGIA 297 ED+D N DDF+ARVN+DL+GK+VNIASR+AGF+ KRF+G+++ A + + +LR A Sbjct: 371 EDLDLNLDDFIARVNSDLVGKFVNIASRSAGFLVKRFEGRVND--AALANPLMVQLREAA 428 Query: 298 PEILALYEQREYGKALRAIMEQADVINAYVDANKPWELAKDSTKDVQLHEVCSRLLEAFR 357 P+I LYE+REY KALR +ME AD +NAYVD KPW+LAKD + +LH CS LEAFR Sbjct: 429 PQIADLYEKREYSKALRTVMELADAVNAYVDTEKPWDLAKDEAQRDKLHAACSVALEAFR 488 Query: 358 ILTVYLKPVLPQLAAQVEGFLNVAPFTWADVQTALPDGHVINAYAHLMQRVDPKMLDAL 416 +L VYLKP+LP A++E FLN+ P W + L I Y+HLM RVD K +DAL Sbjct: 489 LLAVYLKPILPSTVARIEAFLNIEPLNWRAIDAQLSSARPIQPYSHLMTRVDKKQVDAL 547 >NMA0275_1 [J] COG0143 Methionyl-tRNA synthetase NmA Neisseria meningitidis Z2491 Length = 566 Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust. Identities = 261/426 (61%), Positives = 309/426 (72%), Gaps = 17/426 (3%) Query: 1 MFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLSGATPVMKSSEHFFFK 60 MFLPDR++KGECPKC +DQYGD+CE C Y+PT+L NPYS +SGA P ++ SEHFFFK Sbjct: 132 MFLPDRFVKGECPKCHAQDQYGDNCEVCGTTYSPTELINPYSAVSGAKPELRESEHFFFK 191 Query: 61 LSDPKCVAFLREWALDNN------RLQPEVANKAKEWLDGEG---GLGDWDISRDAPYFG 111 L + C FL+ W NN LQ E NK KEWL GEG L DWDISRDAPYFG Sbjct: 192 LGE--CADFLKAWTSGNNPHDGKPHLQAEALNKMKEWL-GEGEETTLSDWDISRDAPYFG 248 Query: 112 IEIPDAPGKYFYVWLDAPIGYLASLKNYFGKTGRDFDA-FMADDKTEQYHFIGKDITYFH 170 EIPDAPGKYFYVWLDAP+GY+AS KN + G DFD F AD +TE YHFIGKDI YFH Sbjct: 249 FEIPDAPGKYFYVWLDAPVGYMASFKNLCDRIGVDFDEYFKADSQTEMYHFIGKDILYFH 308 Query: 171 TLFWPAMLKFAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIA 230 LFWPAML F+G + PT V+AHGF+TV G+KMSKSRGT I+ YL+ G+NPEW+RYYIA Sbjct: 309 ALFWPAMLHFSGHRAPTGVYAHGFLTVDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIA 368 Query: 231 AKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGKLSTAWATADDAFL 290 AKLN+K+ED+D N DF++RVN+DL+GKYVNIA+RA+GFIAKRF+G+L AD L Sbjct: 369 AKLNSKIEDIDLNLQDFISRVNSDLVGKYVNIAARASGFIAKRFEGRLKD---VADSELL 425 Query: 291 TKLRGIAPEILALYEQREYGKALRAIMEQADVINAYVDANKPWELAKDSTKDVQLHEVCS 350 KL + I YE REY +ALR IM AD++N YVDANKPWELAK +D +LHEVCS Sbjct: 426 AKLTAQSEAIAECYESREYARALRDIMALADIVNEYVDANKPWELAKQEGQDARLHEVCS 485 Query: 351 RLLEAFRILTVYLKPVLPQLAAQVEGFLNVAPFTWADVQTALPDGHVINAYAHLMQRVDP 410 L+ AF +LT YL PVLPQ AA FLN+ TWA+ + L H IN Y HLMQRV+ Sbjct: 486 ELINAFTMLTAYLAPVLPQTAANAAKFLNLEAITWANTRETL-GKHAINKYEHLMQRVEQ 544 Query: 411 KMLDAL 416 K +D L Sbjct: 545 KQVDDL 550 >NMB0030_1 [J] COG0143 Methionyl-tRNA synthetase Nme Neisseria meningitidis MC58 Length = 566 Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust. Identities = 261/426 (61%), Positives = 308/426 (72%), Gaps = 17/426 (3%) Query: 1 MFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLSGATPVMKSSEHFFFK 60 MFLPDR++KGECPKC +DQYGD+CE C Y+PT+L NPYS +SG P ++ SEHFFFK Sbjct: 132 MFLPDRFVKGECPKCHAQDQYGDNCEVCGTTYSPTELINPYSAVSGTKPELRESEHFFFK 191 Query: 61 LSDPKCVAFLREWALDNN------RLQPEVANKAKEWLDGEG---GLGDWDISRDAPYFG 111 L + C FL+ W NN LQ E NK KEWL GEG L DWDISRDAPYFG Sbjct: 192 LGE--CADFLKAWTSGNNPHDGKPHLQAEALNKMKEWL-GEGEETTLSDWDISRDAPYFG 248 Query: 112 IEIPDAPGKYFYVWLDAPIGYLASLKNYFGKTGRDFDA-FMADDKTEQYHFIGKDITYFH 170 EIPDAPGKYFYVWLDAP+GY+AS KN + G DFD F AD +TE YHFIGKDI YFH Sbjct: 249 FEIPDAPGKYFYVWLDAPVGYMASFKNLCDRIGVDFDEYFKADSQTEMYHFIGKDILYFH 308 Query: 171 TLFWPAMLKFAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIA 230 LFWPAML F+G + PT V+AHGF+TV G+KMSKSRGT I+ YL+ G+NPEW+RYYIA Sbjct: 309 ALFWPAMLHFSGHRAPTGVYAHGFLTVDGQKMSKSRGTFITAKSYLEQGLNPEWMRYYIA 368 Query: 231 AKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGKLSTAWATADDAFL 290 AKLN+K+ED+D N DF++RVN+DL+GKYVNIA+RA+GFIAKRF+G+L AD L Sbjct: 369 AKLNSKIEDIDLNLQDFISRVNSDLVGKYVNIAARASGFIAKRFEGRLKD---VADSELL 425 Query: 291 TKLRGIAPEILALYEQREYGKALRAIMEQADVINAYVDANKPWELAKDSTKDVQLHEVCS 350 KL + I YE REY KALR IM AD++N YVDANKPWELAK +D +LHEVCS Sbjct: 426 AKLTAQSEAIAECYESREYAKALRDIMALADIVNEYVDANKPWELAKQEGQDERLHEVCS 485 Query: 351 RLLEAFRILTVYLKPVLPQLAAQVEGFLNVAPFTWADVQTALPDGHVINAYAHLMQRVDP 410 L+ AF +LT YL PVLPQ AA FLN+ TWA+ + L H IN Y HLMQRV+ Sbjct: 486 ELINAFTMLTAYLAPVLPQTAANAAKFLNLEAITWANTRDTL-GKHAINKYEHLMQRVEQ 544 Query: 411 KMLDAL 416 K +D L Sbjct: 545 KQVDDL 550 >PM0303_1 [J] COG0143 Methionyl-tRNA synthetase Pmu Pasteurella multocida Length = 572 Score = 463 bits (1192), Expect = e-130, Method: Compositional matrix adjust. Identities = 229/419 (54%), Positives = 291/419 (69%), Gaps = 11/419 (2%) Query: 1 MFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLSGATPVMKSSEHFFFK 60 MFLPDR++KG CPKC +DQYGD+CE CS+ Y+PT+L NP S +SGATPV+K SEHFFF Sbjct: 135 MFLPDRFVKGTCPKCKAEDQYGDNCEVCSSTYSPTELINPRSVVSGATPVLKESEHFFFD 194 Query: 61 LSDPKCVAFLREWALDNNRLQPEVANKAKEWLDGEGGLGDWDISRDAPYFGIEIPDAPGK 120 L P L+ W + + LQPE+ANK +EW E GL WDISRDAPYFG +IPD K Sbjct: 195 L--PAFEGMLKAW-IKSGSLQPEIANKMQEWF--ESGLQQWDISRDAPYFGFKIPDTEDK 249 Query: 121 YFYVWLDAPIGYLASLKNYFGKTGRDFDAFMADDKT-EQYHFIGKDITYFHTLFWPAMLK 179 YFYVWLDAPIGY+AS KN KTG +FD F D + E YHFIGKDI YFH+LFWPAML Sbjct: 250 YFYVWLDAPIGYMASFKNLCDKTGLNFDDFWKKDSSAELYHFIGKDIVYFHSLFWPAMLD 309 Query: 180 FAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIAAKLNAKVED 239 + PTNVFAHG++TV+G KMSKSRGT I YL + PE+LRYY AAKLN ++ED Sbjct: 310 GCDLRKPTNVFAHGYVTVNGVKMSKSRGTFIQASTYLR-HLAPEYLRYYYAAKLNNRIED 368 Query: 240 VDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGKLSTAWATADDAFLTKLRGIAPE 299 +D N +DFV R+NAD++ K+VN+ASR+AGFI KRFDGKLS A+ L + A + Sbjct: 369 LDLNLEDFVQRLNADVVNKFVNLASRSAGFITKRFDGKLSA--EIAEPELLAEFVEKAAQ 426 Query: 300 ILALYEQREYGKALRAIMEQADVINAYVDANKPWELAKDSTKDVQLHEVCSRLLEAFRIL 359 I YE+RE+GK +R +M+ AD N Y+D PW +AK+ ++ +L VCS L+ FR+L Sbjct: 427 IATYYEEREFGKVVREVMQLADKANKYIDDKAPWVMAKEEGREAELQAVCSMALQLFRVL 486 Query: 360 TVYLKPVLPQLAAQVEGFLNVAPFTWADVQTALPDGHVINAYAHLMQRVDPKMLDALGN 418 +YLKPV+PQ+ A+ E FL TW + L + H I + L QR+DPK ++A+ N Sbjct: 487 AIYLKPVIPQIIARAEAFLQ-DELTWESLNRPLLN-HAILPFKALAQRLDPKQIEAIVN 543 >HI1276_1 [J] COG0143 Methionyl-tRNA synthetase Hin Haemophilus influenzae Length = 572 Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/417 (53%), Positives = 281/417 (67%), Gaps = 11/417 (2%) Query: 1 MFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLSGATPVMKSSEHFFFK 60 MFLPDR++KG CPKC +DQYGD+CE C++ Y+P DL NP S +SG TP++K SEHFFF Sbjct: 135 MFLPDRFVKGTCPKCKAEDQYGDNCEVCASTYSPMDLINPRSAVSGTTPIVKESEHFFFD 194 Query: 61 LSDPKCVAFLREWALDNNRLQPEVANKAKEWLDGEGGLGDWDISRDAPYFGIEIPDAPGK 120 L P L+EW + LQ E+ANK +EW E L WDISRDAPYFG EIP A K Sbjct: 195 L--PAFEGMLKEWTRSGS-LQSEIANKMQEWF--ESDLQQWDISRDAPYFGFEIPGAKDK 249 Query: 121 YFYVWLDAPIGYLASLKNYFGKTGRDFDAFMAD-DKTEQYHFIGKDITYFHTLFWPAMLK 179 +FYVWLDAPIGY+AS KN + G DF+ F A+ E YHFIGKDI YFH+LFWPAML+ Sbjct: 250 FFYVWLDAPIGYMASFKNLCNREGIDFNEFWAEGSDAELYHFIGKDIVYFHSLFWPAMLE 309 Query: 180 FAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYYIAAKLNAKVED 239 +G + PTNVFAHG++TV G KMSKSRGT I YL+ ++PE LRYY AAKLN ++ED Sbjct: 310 GSGYRKPTNVFAHGYVTVDGAKMSKSRGTFIQASTYLN-HIDPECLRYYYAAKLNDRIED 368 Query: 240 VDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGKLSTAWATADDAFLTKLRGIAPE 299 +DFN +DFV RVN D++ K VN+ASR AGFIAKRF+GKL+ D + + A + Sbjct: 369 LDFNLEDFVQRVNTDIVNKLVNLASRNAGFIAKRFEGKLAD--KLEDKSLFAEFTAQAEQ 426 Query: 300 ILALYEQREYGKALRAIMEQADVINAYVDANKPWELAKDSTKDVQLHEVCSRLLEAFRIL 359 I A YE REY K +R IM D N Y+D PW +AK+ K+ +L VCS +E FR+L Sbjct: 427 IAAYYESREYNKTIREIMALTDKANKYIDEKAPWVIAKEEGKEAELQAVCSMGIELFRVL 486 Query: 360 TVYLKPVLPQLAAQVEGFLNVAPFTWADVQTALPDGHVINAYAHLMQRVDPKMLDAL 416 YLKPVLP+LA + E FL A W ++ L GH + + L R++ K +DA+ Sbjct: 487 MSYLKPVLPKLAERAETFLQ-AELRWDNIHQPLL-GHTLAPFKALFSRLEKKQIDAV 541