BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0049.p (257 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0102 [E] COG0559 Branched-chain amino acid ABC-type transpo... 132 1e-30 BMEII0874_1 [E] COG0559 Branched-chain amino acid ABC-type trans... 105 1e-22 APE2522 [E] COG0559 Branched-chain amino acid ABC-type transport... 101 2e-21 RSc2440 [E] COG0559 Branched-chain amino acid ABC-type transport... 95 2e-19 DR0281 [E] COG0559 Branched-chain amino acid ABC-type transport ... 94 2e-19 >BMEII0102 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 287 Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 122/197 (61%) Query: 4 DILLQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYALDP 63 ++ LQ + +G+L+G +YA++A GL L++GV++IVN AHG +M G Y ++ +FA + +DP Sbjct: 2 NLFLQIVINGILLGGLYAIMAQGLALVWGVLNIVNLAHGTMIMLGGYVTWLVFANFGIDP 61 Query: 64 IFTLPLTALFLFGLGALLYKLVIRKITNAPMVSQIFTTFGLMILFRGIAQFFWKADFRTI 123 + A +F G L + V+ + PM + + TFG+ I+F +AQ + ADFR I Sbjct: 62 FIGVFAAAAVMFCFGYALQRCVLNLVARGPMFNALLITFGIEIIFTDVAQHVFSADFRAI 121 Query: 124 ENSMVAGHVSLGGIQIGSPQLTAGLGAIVVTGVIYLFLTRTKLGAALEATAADKEAAQLM 183 S A + ++ GI I L A + A VV+G ++ F+ TKLG A+ ATA + AA+L Sbjct: 122 IPSYSAVNFNVYGITIPLMNLLAFIAAFVVSGFMFFFMMTTKLGRAIRATAQNLTAARLY 181 Query: 184 GIDSQKMFALAWGVGAA 200 G++ + ++A+ +G+G A Sbjct: 182 GVEPRHLYAVTFGIGVA 198 >BMEII0874_1 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 330 Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 108/182 (59%), Gaps = 1/182 (0%) Query: 20 YALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYALDPIFTLPLTALFLFGLGA 79 +A+VA+GLTLIFG++ +VNFAHGEFLM GM+ ++ + L P + + +F LGA Sbjct: 27 FAIVAVGLTLIFGIVKVVNFAHGEFLMAGMFVTWLITTKLGLHPYAAVIIVLPAMFILGA 86 Query: 80 LLYKLVIRKI-TNAPMVSQIFTTFGLMILFRGIAQFFWKADFRTIENSMVAGHVSLGGIQ 138 L +L+I+ + + +QIF T GL +A + AD N + + +G ++ Sbjct: 87 LTQRLLIQPLMASDDGHAQIFATVGLSTAMINLALLIFGADIANTPNFGLRTPIEIGPLR 146 Query: 139 IGSPQLTAGLGAIVVTGVIYLFLTRTKLGAALEATAADKEAAQLMGIDSQKMFALAWGVG 198 + + Q+ LGAIV+ + LFL ++ G A+ A A + AA+LMG++ +++ L +G+G Sbjct: 147 VLTGQVFIFLGAIVLVVALQLFLKNSQTGHAIRAVAQHRSAAELMGVNVSRIYILCFGLG 206 Query: 199 AA 200 AA Sbjct: 207 AA 208 >APE2522 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Ape Aeropyrum pernix Length = 265 Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 104/173 (60%) Query: 25 IGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYALDPIFTLPLTALFLFGLGALLYKL 84 +GL +I+GVM+I+NFAHG+F+M G ++++ F L LDP+ L + +F LG + + Sbjct: 1 MGLAMIWGVMEIINFAHGDFMMLGALAAYYAFTLMGLDPLAGGVLAFVMVFALGVGVQRG 60 Query: 85 VIRKITNAPMVSQIFTTFGLMILFRGIAQFFWKADFRTIENSMVAGHVSLGGIQIGSPQL 144 VI +I +AP+++QI TF ++++ R Q R + +V LG + +L Sbjct: 61 VINRILDAPLLTQIAATFAVLLIIRYGVQAVLGPYTRRLVTWYQDYYVGLGFTTVPLSKL 120 Query: 145 TAGLGAIVVTGVIYLFLTRTKLGAALEATAADKEAAQLMGIDSQKMFALAWGV 197 L ++V+ ++Y+ L RT +G A+ AT+ ++ AQLMGI+ +++ + +G+ Sbjct: 121 LIFLVSLVILALLYILLNRTDMGIAIRATSQNRMVAQLMGINVSRVYDVTFGI 173 >RSc2440 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 311 Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 108/202 (53%), Gaps = 23/202 (11%) Query: 4 DILLQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSF---------- 53 DI +Q + +GL++G IYAL+A+G T+++G++ I+NFAHG+ LM G S+ Sbjct: 2 DIFIQQIVNGLVLGSIYALIALGYTMVYGILGIINFAHGDVLMIGAMSALTAINFLQKFF 61 Query: 54 -----WLFALYALDPIFTLPLTALFLFGLGALLYKLVIRKITNAPMVSQIFTTFGLMILF 108 WL + AL +F +P+ A+ + + + Y R + NAP ++ + T G+ I+ Sbjct: 62 PNLPDWLTLVLAL--LFAMPVCAVVAYTIERVAY----RPLRNAPRLAPLITAIGVSIVL 115 Query: 109 RGIAQFFWKADFRTIENSMVAGHVSLG--GIQIGSPQLTAGLGAIVVTGVIYLFLTRTKL 166 + +A W + T + + + +G G I ++ L ++ V + L + RTKL Sbjct: 116 QTLAMMIWSRNPLTFPQLLPSSPIDIGSTGATITGKEIAIILVSLAVMTGLTLLVNRTKL 175 Query: 167 GAALEATAADKEAAQLMGIDSQ 188 G A+ ATA ++ A LMG++ Sbjct: 176 GRAMRATAENQRVAGLMGVNPN 197 >DR0281 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Dra Deinococcus radiodurans Length = 285 Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 110/195 (56%), Gaps = 1/195 (0%) Query: 6 LLQTLASGLLIGLIYALVAIGLTLIFGVMDIVNFAHGEFLMFGMYSSFWLFALYALDPIF 65 +LQ L + L +G +YALVA+GLTL++GVM I NFAHG M G Y S+ + L + Sbjct: 4 VLQQLFNALALGGVYALVALGLTLVYGVMKIPNFAHGGLYMLGAYLSYAGISSLGLGYVP 63 Query: 66 TLPLTALFLFGLGALLYKLVIRKITNAPMVSQIFTTFGLMILFRGIAQFFWKADFRTIEN 125 L L+A+ + L AL+ +++ + NAP V + G++ Q W ADF+ + Sbjct: 64 ALLLSAVVVALLAALMERVIFFPLRNAPHVQPMIAALGVLFFLEAGVQLIWGADFKQVAE 123 Query: 126 SMVAGHVSLGGIQIGSPQLTAGLGAIVVTGVIYLFLTRTKLGAALEATAADKEAAQLMGI 185 + G +++GG+ I +L + ++V + FL RT GA +EA A ++E A+L+GI Sbjct: 124 P-IPGILNIGGVTITWQRLIVLVASVVAMLGLNFFLRRTLTGATIEAMAQNREGARLVGI 182 Query: 186 DSQKMFALAWGVGAA 200 ++ ++ L + + A Sbjct: 183 NTGRVGMLTFAISGA 197