BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0046.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

APE2522 [E] COG0559 Branched-chain amino acid ABC-type transport...    74   8e-14
BMEII0874_1 [E] COG0559 Branched-chain amino acid ABC-type trans...    69   2e-12

>APE2522 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Ape Aeropyrum pernix
          Length = 265

 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 53/76 (69%)

Query: 9   FFPIFPEVGANFILIAFVVVNLGGFGSVVGALIAGVLVGVIEVMGGLFLGPQYKMAIVLV 68
           F+PIFPE+G  F LIAF+ V LGGFG+V GA + G+++GV E +  LF+ P  K  +  +
Sbjct: 188 FYPIFPEMGGFFALIAFIAVVLGGFGNVYGAYVGGLIIGVTESVSALFIEPALKDVVAFL 247

Query: 69  LFLTVLMFRPQGLMGK 84
           LF+ ++M +P GL G+
Sbjct: 248 LFILIIMIKPTGLFGR 263


>BMEII0874_1 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Bme Brucella melitensis
          Length = 330

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 54/84 (64%)

Query: 1   VAGALLSTFFPIFPEVGANFILIAFVVVNLGGFGSVVGALIAGVLVGVIEVMGGLFLGPQ 60
           +A  L++  +P    +G  F+L AFVVV LGG GS+ GA +  +++GVI+ M G ++G  
Sbjct: 212 LAAVLIAPLYPTSSNIGTYFVLTAFVVVVLGGLGSIPGAFVGALIIGVIDTMSGYYIGSD 271

Query: 61  YKMAIVLVLFLTVLMFRPQGLMGK 84
            + A+V  +FL +L+ +P GL GK
Sbjct: 272 LREAVVFGIFLLILILKPSGLFGK 295