BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0045.p         (191 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid trans...   103   3e-22
APE2523 [E] COG4177 ABC-type branched-chain amino acid transport...    82   8e-16
SMc01950 [E] COG4177 ABC-type branched-chain amino acid transpor...    81   2e-15
BMEI0259 [E] COG4177 ABC-type branched-chain amino acid transpor...    81   2e-15
PA1072 [E] COG4177 ABC-type branched-chain amino acid transport ...    80   2e-15

>BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Bme Brucella melitensis
          Length = 315

 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 46  QNLAILILMAAQIGVSWNIVGGYAGQVSLGHVAFYGIGAYTSAILLSVYGINPWFAMVVG 105
            ++ I I + A +  +WNIVGG+AGQ+SLGH  FYGIG YT  IL ++ GI+PWF+M +G
Sbjct: 21  SHIFITICLFAALSTAWNIVGGFAGQMSLGHAVFYGIGGYTGVILFNM-GISPWFSMFIG 79

Query: 106 GVIAALVSLVIGWSCFRLKGHYFAMATIAVAEIIQIV 142
             IAALV +VI + CFRLKG ++++A+IA  E+ +++
Sbjct: 80  AFIAALVGMVISYPCFRLKGPFYSLASIAFLEVFRVL 116


>APE2523 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Ape Aeropyrum pernix
          Length = 332

 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 5/145 (3%)

Query: 11  TPTASAPGFNKTHGLLVALLVLALALPLYVT---SPSHQNLAILILMAAQIGVSWNIVGG 67
           T  AS   F + + L  A ++LA+A P+ +     P + N+  L LM     ++WN++ G
Sbjct: 6   TAAASVKEFARYY-LYGAAMILAVA-PVLLDLAGKPFYVNMIFLSLMYGISAMAWNLLMG 63

Query: 68  YAGQVSLGHVAFYGIGAYTSAILLSVYGINPWFAMVVGGVIAALVSLVIGWSCFRLKGHY 127
           Y G  SLGH  F+G+G YT  +L   Y + PW  + V G+ AA+++  +     RL+ H+
Sbjct: 64  YTGLFSLGHAVFFGVGGYTVIVLALRYNVTPWIGLPVAGLTAAMLAAALSPPLLRLRSHW 123

Query: 128 FAMATIAVAEIIQIVFTNWDFAGAA 152
           F +ATIA+ EI ++ F +WD+ GA+
Sbjct: 124 FTLATIALGEIFRLSFAHWDYVGAS 148


>SMc01950 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Sme Sinorhizobium meliloti
          Length = 461

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 64/101 (63%)

Query: 46  QNLAILILMAAQIGVSWNIVGGYAGQVSLGHVAFYGIGAYTSAILLSVYGINPWFAMVVG 105
            N  I IL+   +    NIV G AG + LG+VAFY +GAY+ A+L S +G++ W  + + 
Sbjct: 134 DNFGIQILIYVMLAWGLNIVVGLAGLLDLGYVAFYAVGAYSYALLSSYFGLSFWVLLPIA 193

Query: 106 GVIAALVSLVIGWSCFRLKGHYFAMATIAVAEIIQIVFTNW 146
           G++AA   +V+G+   RL+G Y A+ T+A  EII++V  NW
Sbjct: 194 GLLAACWGVVLGFPVLRLRGDYLAIVTLAFGEIIRLVLINW 234


>BMEI0259 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Bme Brucella melitensis
          Length = 459

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 64/101 (63%)

Query: 46  QNLAILILMAAQIGVSWNIVGGYAGQVSLGHVAFYGIGAYTSAILLSVYGINPWFAMVVG 105
            N  + IL+   +    NIV G AG + LG+VAFY +GAY+ AIL S +G++ W  + + 
Sbjct: 132 DNFGVQILIYVMLAWGLNIVVGLAGLLDLGYVAFYAVGAYSYAILSSYFGLSFWVLLPIA 191

Query: 106 GVIAALVSLVIGWSCFRLKGHYFAMATIAVAEIIQIVFTNW 146
           G++AA   +++G+   RL+G Y A+ T+A  EII++V  NW
Sbjct: 192 GLLAATWGIILGFPVLRLRGDYLAIVTLAFGEIIRLVLINW 232


>PA1072 [E] COG4177 ABC-type branched-chain amino acid transport system,
           permease component Pae Pseudomonas aeruginosa
          Length = 417

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%)

Query: 39  YVTSPSHQNLAILILMAAQIGVSWNIVGGYAGQVSLGHVAFYGIGAYTSAILLSVYGINP 98
           +  S    ++A LIL+   +G+  NIV G AG + LG+V FY +GAYT A+L    G   
Sbjct: 107 FFASRGAVDIATLILIYVMLGIGLNIVVGLAGLLDLGYVGFYAVGAYTYALLAEYAGFGF 166

Query: 99  WFAMVVGGVIAALVSLVIGWSCFRLKGHYFAMATIAVAEIIQIVFTN 145
           W A+ + G++AAL   ++G+   RL+G Y A+ T+   EII+I+  N
Sbjct: 167 WTALPIAGMMAALFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRN 213