BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0043.p         (236 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1071 [E] COG0411 ABC-type branched-chain amino acid transport ...    94   2e-19
alr2539 [E] COG0411 ABC-type branched-chain amino acid transport...    94   2e-19
RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport...    90   5e-18
APE2524 [E] COG0411 ABC-type branched-chain amino acid transport...    90   5e-18
livG [E] COG0411 ABC-type branched-chain amino acid transport sy...    89   9e-18

>PA1071 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Pae Pseudomonas aeruginosa
          Length = 255

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 15/129 (11%)

Query: 31  PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90
           PNGAGKTT+FNC+ G+  PT G I L+  +I G+   + AR G+ RTFQ  R F  MTA+
Sbjct: 39  PNGAGKTTVFNCLTGFYQPTGGLIRLDGEEIQGLPGHKIARKGVVRTFQNVRLFKEMTAV 98

Query: 91  ENVMVGA-------FLNERGVGPA-RRTAQELLDF-------VNLGRFADKPAGSMTISE 135
           EN++V         FL      PA RR+ +E +++       VNL  FA++ AG++   +
Sbjct: 99  ENLLVAQHRHLNTNFLAGLFKTPAFRRSEREAMEYAAHWLEEVNLTEFANRSAGTLAYGQ 158

Query: 136 QRRLAVARA 144
           QRRL +AR 
Sbjct: 159 QRRLEIARC 167


>alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Nos Nostoc sp. PCC 7120
          Length = 259

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 15/135 (11%)

Query: 31  PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90
           PNGAGKTT+FN I    PP++G++  ++  I+ + P Q A +GI RTFQ  R F  ++AL
Sbjct: 43  PNGAGKTTLFNLITALIPPSSGELIYQNKAIAKLRPHQIASLGIARTFQNIRLFGELSAL 102

Query: 91  ENVMVGAFLNER--------GVGPA-------RRTAQELLDFVNLGRFADKPAGSMTISE 135
           ENV++   L+ +        G+ PA       R  A ELL+ V L   A + A +    +
Sbjct: 103 ENVIIARHLHTKSTIFTGVLGLPPAPKEESRSREKALELLEMVGLSDRAQEKARNFAYGD 162

Query: 136 QRRLAVARARAVGEQ 150
           QRRL +ARA A+  Q
Sbjct: 163 QRRLEIARALALEPQ 177


>RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 257

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 15/131 (11%)

Query: 31  PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90
           PNGAGKTT FN I G   P  G+  L        +  + A+ GI RTFQ  R F  MTA 
Sbjct: 40  PNGAGKTTFFNVITGLYTPDAGEFVLAGQPYQPTAVHEVAKAGIARTFQNIRLFGDMTAA 99

Query: 91  ENVMVGAFLNERG--VGPARRT-------------AQELLDFVNLGRFADKPAGSMTISE 135
           ENVMVG  +  +   +G   RT             A +LLD+V +G++A+  A +++   
Sbjct: 100 ENVMVGRHVRTKAGLIGAVFRTKAAREEEASIEDWAHDLLDYVGIGKYANYTARNLSYGH 159

Query: 136 QRRLAVARARA 146
           QRRL +ARA A
Sbjct: 160 QRRLEIARALA 170


>APE2524 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Ape Aeropyrum pernix
          Length = 242

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 67/116 (57%)

Query: 31  PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90
           PNGAGKTT+FN I+G   P  G +  + + I+G    + +R GI RTFQ+ R   ++T L
Sbjct: 41  PNGAGKTTLFNIISGIYMPDRGRVIYKGVDITGWPAYRRSRAGIARTFQIVRPLANLTVL 100

Query: 91  ENVMVGAFLNERGVGPARRTAQELLDFVNLGRFADKPAGSMTISEQRRLAVARARA 146
            NV+VGA L    +  AR  A E +D V L    D  A  + + E++RL +ARA A
Sbjct: 101 NNVIVGALLRTNDIREARERAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALA 156


>livG [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Eco Escherichia coli K12
          Length = 255

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 15/129 (11%)

Query: 31  PNGAGKTTMFNCIAGYSPPTTGDIWLEDLKISGMSPEQCARIGIGRTFQVARTFTSMTAL 90
           PNGAGKTT+FNC+ G+  PT G I L D  + G+  +Q AR+G+ RTFQ  R F  MT +
Sbjct: 39  PNGAGKTTVFNCLTGFYKPTGGTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVI 98

Query: 91  ENVMV--------GAFLNERGVGPARRTAQELLD-------FVNLGRFADKPAGSMTISE 135
           EN++V        G F         RR   E LD        + L   A++ A ++   +
Sbjct: 99  ENLLVAQHQQLKTGLFSGLLKTPSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGD 158

Query: 136 QRRLAVARA 144
           QRRL +AR 
Sbjct: 159 QRRLEIARC 167