BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0035.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yurN [G] COG1175 ABC-type sugar transport systems, permease c...    98   8e-21
BH3689 [G] COG1175 ABC-type sugar transport systems, permease co...    96   5e-20
mll1715 [G] COG1175 ABC-type sugar transport systems, permease c...    95   8e-20
lin0218 [G] COG1175 ABC-type sugar transport systems, permease c...    91   1e-18
AGl2963 [G] COG1175 ABC-type sugar transport systems, permease c...    87   2e-17

>BS_yurN [G] COG1175 ABC-type sugar transport systems, permease components
           Bsu Bacillus subtilis
          Length = 292

 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 95/170 (55%), Gaps = 5/170 (2%)

Query: 5   QFSITPWLLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMADDPVF 64
           Q  I P+L L+PA+V L+ F + P    ++ S F     +    F+G++NY  +  DPVF
Sbjct: 4   QNKIIPYLFLVPALVFLL-FVYIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHDPVF 62

Query: 65  WRALFNNLWFALGTIPVSIALAIMMALWVNDKLLGR--GLLRLAYFTPTVLPMIAVANIW 122
           ++AL NN+ +A+ +I   +   +++A  + DKL+ +     R  +F P V+ M  +A ++
Sbjct: 63  YQALTNNVLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIALLF 122

Query: 123 LFFYTPQYGLLEQLTNALGLP--SHNWLGNPDTVLGCMMVVAIWKEAGLV 170
            F Y P+ GLL QL  A+GL   +  WLG+  T +  ++ V+ W+  G +
Sbjct: 123 DFIYNPETGLLNQLLQAIGLDQLTRAWLGDDSTAMLSVIFVSQWQSVGYI 172


>BH3689 [G] COG1175 ABC-type sugar transport systems, permease components
           Bha Bacillus halodurans
          Length = 300

 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 84/157 (53%)

Query: 11  WLLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMADDPVFWRALFN 70
           +  L PA+V +  F   P +  I+ SF      A  S FVG  NYA + DD     AL N
Sbjct: 18  YAFLTPALVTIGVFILLPILYAIYLSFQKVNLLAGFSEFVGFNNYARITDDYRAGIALRN 77

Query: 71  NLWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVLPMIAVANIWLFFYTPQY 130
             ++    +P    LA+++A  +N K+ G    R+ +F PT+     +A I++F Y  Q 
Sbjct: 78  TAFYVAIVVPTQTILALILAACLNAKIKGTNFFRVVFFLPTLTSSAVLALIFMFMYNNQN 137

Query: 131 GLLEQLTNALGLPSHNWLGNPDTVLGCMMVVAIWKEA 167
           GL+ Q+  +LGLP++NWLG+P   L  +M++ IW  A
Sbjct: 138 GLVNQVLASLGLPTYNWLGDPSVALLAIMIMNIWATA 174


>mll1715 [G] COG1175 ABC-type sugar transport systems, permease components
           Mlo Mesorhizobium loti
          Length = 307

 Score = 94.7 bits (234), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 84/160 (52%)

Query: 9   TPWLLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMADDPVFWRAL 68
           T WLL  PA+VLL+ F   P  A I+  F     G     FVG ENYA + +D  F R+L
Sbjct: 24  TAWLLAAPAIVLLLLFVLLPVAAVIFLGFTDFELGYGKFRFVGFENYAHLLNDRTFRRSL 83

Query: 69  FNNLWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVLPMIAVANIWLFFYTP 128
           +N   +     PVSI L + +AL +  +   RG  R  YF P    ++A+A +W + + P
Sbjct: 84  WNTSVYTAIVAPVSIVLGLGVALLIEGEGRARGFFRTVYFLPVASLIVAMATVWQYIFHP 143

Query: 129 QYGLLEQLTNALGLPSHNWLGNPDTVLGCMMVVAIWKEAG 168
             G L  L +  G+P  NWLG  +TVL  + ++ IW+  G
Sbjct: 144 TIGPLNALLSLAGIPGPNWLGASNTVLYSLSIIGIWQSVG 183


>lin0218 [G] COG1175 ABC-type sugar transport systems, permease components
           Lin Listeria innocua
          Length = 292

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 1/159 (0%)

Query: 12  LLLMPAMVLLIAFTHYPAVATIWHSFFSTPKGASPSVFVGMENYALMADDPVFWRALFNN 71
           + L+P ++  + F   P + ++  SF +     S   F G ENY  + +DP FW++  N 
Sbjct: 15  IFLLPNLLGFLIFIAIPILGSLGISF-TDWDLVSTIHFTGFENYKRLFNDPEFWKSFRNT 73

Query: 72  LWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVLPMIAVANIWLFFYTPQYG 131
           + F +G +P  + L +  AL +N K+  R   R  YF P +   +AV+ +W + + P YG
Sbjct: 74  ITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYG 133

Query: 132 LLEQLTNALGLPSHNWLGNPDTVLGCMMVVAIWKEAGLV 170
           L+    + +G+   NWL +P T +  +++ + WK+ G V
Sbjct: 134 LINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFV 172


>AGl2963 [G] COG1175 ABC-type sugar transport systems, permease components
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 324

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 18/174 (10%)

Query: 9   TPWLLLMPAMVLLIAFTHYPAVATIWHSFFSTP-KGASPSVFVGMENY------------ 55
           + WL L P  ++L     +P V T+W SF          + FVG++NY            
Sbjct: 26  SAWLFLAPTFLVLALVAGWPLVRTVWFSFTDASLTNLDGAQFVGLKNYLTWITLSSGRTI 85

Query: 56  --ALMADDPVFWRALFNNLWFALGTIPVSIALAIMMALWVNDKLLGRGLLRLAYFTPTVL 113
              L+AD P +W A+ N L F + ++     L +++AL +N +  GRG +R A   P  +
Sbjct: 86  YRGLLAD-PAWWGAVLNTLKFTILSVSFETVLGLIVALVLNAEFKGRGFVRAAILVPWAI 144

Query: 114 PMIAVANIWLFFYTPQYGLLEQLTNALGLPSHN--WLGNPDTVLGCMMVVAIWK 165
           P I  A +W +    Q+G+L  L   LGL S+   W  NPDT +  +++V IWK
Sbjct: 145 PTIVSAQMWAWMLNDQFGILNDLFLNLGLISNKIAWTANPDTAMVAVLIVDIWK 198